LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01047	ATGATGGGAACACAACTAATCGTGAGATCAATATGCTTTGGTTTCTTGTTATCTTTGAGTTTCAGTTCGTTCAGTTTTACAAAGGCACAAACACCCATTTACCAGGTAAGTGACTGCCAAACCAAAACCCAAGAACCTCTCACCACTGCATACAAAAGCAATCTTGAGATAATCCTCTCATGGATGTCCTCAGATGCAGCCACAAGCAAAGGTTATAACTACACCAGCATAGGAAACAAAAACACCGTGTATGGCCTCTACAATTGCCGTGGTGACGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTAATGCTGCCAGAGAAATTCCTCAGCACTGCCCCAATAGGGTGTCTGCTATGGTGTGGTATGACTTCTGCATTCTGAAGTACTCAAATGAAAACTTCTTTGGGAAAATTCATACACACCCGACATGGCATGCCGTTGGAACAAAAAACATTTCAAACAAGGAAGAGACTAAGAAAGGTAAGGATTTTATGAGAAGCTTAATCAGAAAAGCAACTGTGGAAACCAGCATGTTGTACTACATGGATGCCTTCAATTTGAGTTTCACTCAATCAAGGTATGGCATGGTGCAATGCACTAAAGATCTCACAAATGATGGATGCAGAGAATGTTTAGAGGACATGTTAGCAGAAGTTCGCAAATTCTGCCAACAAAAATTAGGATGGTTCATTTGGTCTGGAACTTGTATGATAAAGTATGATGACTATATGTTCTACCTTCTTAACAACCAAACATCTTCAATTCCTGTGTCGAATCCGGAAACAGATAAACATGGAGGTAAAAAGAGGTCAAAAATCTTAATCATCAGCTTCTCTGTGATGGGGTCAACAATCCTTCTATGTTTGGGTGCATATTTCTTTTGGTACAGAAGAAGAGATGGGATTCGGCTGTCATCATTTCATAAAATTCAAACTGAGGAAACGTTGAACACTGACCTGCCTATTGTCCCATTAATCACAATTATTCAGAGTACTGATAACTTTTCAGAAGCATCTAAATTGGGGGAAGGTGGATTTGGCTCCGTTTACAAGGGGACTCTACCAGATGGAAGACAAATAGCAGTTAAAAGGCTGTCAGAATTTTCTGGTCAAGGTTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTCTATGCATGTTGCTTGGAGGAAAACGAAAAGATACTTGTATACGAGTACATGCCCAACTCAAGTCTGTACTTTCACCTGTTTGGTATGTTTTCAGATTGCTTCAATGCTTCATTAGTAAAAGTGCCAAAGCAAGAGGTCTTCTATACCTTCATGAGGACTCTCGACTCAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGACTTTGGATTGGCAAAGGCATTTGAAATTGGACAGAACCAAGCAAATACAAAGCGAGTAATGGGCACTTAG	1491	0.3957	MMGTQLIVRSICFGFLLSLSFSSFSFTKAQTPIYQVSDCQTKTQEPLTTAYKSNLEIILSWMSSDAATSKGYNYTSIGNKNTVYGLYNCRGDVVGYFCQFCVSNAAREIPQHCPNRVSAMVWYDFCILKYSNENFFGKIHTHPTWHAVGTKNISNKEETKKGKDFMRSLIRKATVETSMLYYMDAFNLSFTQSRYGMVQCTKDLTNDGCRECLEDMLAEVRKFCQQKLGWFIWSGTCMIKYDDYMFYLLNNQTSSIPVSNPETDKHGGKKRSKILIISFSVMGSTILLCLGAYFFWYRRRDGIRLSSFHKIQTEETLNTDLPIVPLITIIQSTDNFSEASKLGEGGFGSVYKGTLPDGRQIAVKRLSEFSGQGSEEFNNEVMFIAKLQHRNLVRLYACCLEENEKILVYEYMPNSSLYFHLFGMFSDCFNASLVKVPKQEVFYTFMRTLDSVIHRDLKASNVLLDHDMNPKISDFGLAKAFEIGQNQANTKRVMGT	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01047	496	Gene3D	Transferase(Phosphotransferase) domain 1	444	496	-	-
	Vimu5g01047	496	ProSiteProfiles	Protein kinase domain profile.	336	496	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01047	496	FunFam	Cysteine-rich receptor-like protein kinase 28	35	134	-	-
	Vimu5g01047	496	ProSiteProfiles	Gnk2-homologous domain profile.	32	135	IPR002902	-
	Vimu5g01047	496	ProSiteProfiles	Gnk2-homologous domain profile.	141	246	IPR002902	-
	Vimu5g01047	496	Pfam	Salt stress response/antifungal	157	244	IPR002902	-
	Vimu5g01047	496	Pfam	Salt stress response/antifungal	39	132	IPR002902	-
	Vimu5g01047	496	Pfam	Protein kinase domain	337	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01047	496	Gene3D	-	143	246	IPR038408	-
	Vimu5g01047	496	Gene3D	-	32	135	IPR038408	-
	Vimu5g01047	496	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	302	411	-	-
	Vimu5g01047	496	Gene3D	Phosphorylase Kinase; domain 1	302	411	-	-
	Vimu5g01047	496	SMART	serkin_6	336	494	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01047	496	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	451	496	-	-
	Vimu5g01047	496	FunFam	Cysteine-rich receptor-like protein kinase 10	144	246	-	-
	Vimu5g01047	496	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Vimu5g01047	496	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Vimu5g01047	496	SUPERFAMILY	Protein kinase-like (PK-like)	311	496	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01047	Vimu-Chr5	17006267	17008309	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g01047	10	496	Receptor kinase-like Gene Family	AT4G05200	36.257	3.27e-97	306

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vimu5g01047		Pkinase	8.1e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01047	-		-	gmx:100795922	640.188