Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01043 ATGTTTTTGGTAAGCTTGAAATCACTAGTTACCAAAGCACAACCACCCTTTTATTTGGGAGATGACTGTGATTTCACCCCTCAAAAGCCTCTCAGCAATGCATACAAAACGAACATTAACAATATCCTCTCATGGCTATCTTCAGATGCAGCTACAAGCAGAGGCTATAACTACAAAAGCATAGGAAACACCACCCCTGTGTATGGCCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGAGTCCTTCAGCACTGCCCTAACAGGGTCTCTGCTGTCATGTACTATAACTTCTGCCTTCTGAGGTACTCCAATCAGAATTTCATTGGGAATGTCACAATAAACCATCCAAGGCATCATGTTGGGAACAAAACTGTGTCTGATGCAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACAAGTTGTACTATATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGAGACCTCACCAATGAGAGTTGCAGACAGTGCTTGGAGGCAATGCTAGCACAGGTTCCAAAATGTTGTGAACATAAGTTGGGGTGGCTTGTAGGAACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTACCTTTTCAACAACCAATCATATATTGTGCCTGGTTTAACAGATGGACTGATAACTGATACTATTCCTCTGTCTGCTTATACAAATTTGCCTATAATCCCATTAATCACAATTCTTGAGAGTACTGATAACTTCTCAGAAGCATCTAAATTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCCGATGGAAGACAAGTTGCAGTCAAAAGGCTATCAAAAGCTTCTAGTCAAGGCACAGAGGAGTTTAAGAATGAAGTAACATTTATAGCCAAATTGCAACATTGCAACCTTGAAAATGAAAAGATACTTGTTTATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATTATTAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGATTCTAGACTCAAGGTAATCCACAGAGATCTCAAAGCTAGCAATGTTCTGTTAGATGATGAAATGAATCCAAAGATATCAGATTTTGGATTAGCTAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAAGCGAGTAATGGGCACTTAG 1272 0.3994 MFLVSLKSLVTKAQPPFYLGDDCDFTPQKPLSNAYKTNINNILSWLSSDAATSRGYNYKSIGNTTPVYGLYDCRGDVVGYFCQFCVSAASRRVLQHCPNRVSAVMYYNFCLLRYSNQNFIGNVTINHPRHHVGNKTVSDAEEIQKGEDFMRSLIRKATVETNKLYYMDGFNLSSTQRRDLTNESCRQCLEAMLAQVPKCCEHKLGWLVGTASCHIKYDDYMFYLFNNQSYIVPGLTDGLITDTIPLSAYTNLPIIPLITILESTDNFSEASKLGEGGFGPVYKGILPDGRQVAVKRLSKASSQGTEEFKNEVTFIAKLQHCNLENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTKRVMGT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01043 423 FunFam Cysteine-rich receptor-like protein kinase 28 19 118 - -
Vimu5g01043 423 Pfam Salt stress response/antifungal 31 117 IPR002902 -
Vimu5g01043 423 ProSiteProfiles Protein kinase domain profile. 267 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01043 423 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 423 - -
Vimu5g01043 423 Gene3D Transferase(Phosphotransferase) domain 1 334 423 - -
Vimu5g01043 423 ProSiteProfiles Gnk2-homologous domain profile. 123 222 IPR002902 -
Vimu5g01043 423 Gene3D Phosphorylase Kinase; domain 1 243 333 - -
Vimu5g01043 423 ProSiteProfiles Gnk2-homologous domain profile. 16 119 IPR002902 -
Vimu5g01043 423 Pfam Protein kinase domain 268 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01043 423 Gene3D - 23 119 IPR038408 -
Vimu5g01043 423 Gene3D - 130 222 IPR038408 -
Vimu5g01043 423 SUPERFAMILY Protein kinase-like (PK-like) 244 423 IPR011009 -
Vimu5g01043 423 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 334 423 - -
Vimu5g01043 423 SMART serkin_6 267 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01043 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01043 Vimu-Chr5 16926160 16928242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01043 34 423 Receptor kinase-like Gene Family AT4G21230 36.703 9.22e-82 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g01043 Pkinase 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01043 - - vum:124821055 806.208