Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01035 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGGTGCTATTTCACAAGCTGGATTCTCATCAAGTTCTGGGCTTCTTTCATGGGAGAAATCTCGATGAGAAGCTACTGAAAAAGTTGAAGAGGAAGCTGATGGACGTCAATGCTGTGATAGATGATGCAGAACAAAAGCAGTTCAGTAATTCATTGGTCAAAGAATGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAGGATATGCTGGACCAAATAGACTATGAATTCTCCAAGACTAAGTTGGGAGCTGAATTCCAGACCAGTTCTAGCAAGGTACACAATTTTGAATCCAAGATCATAGCACTCCTAGATGATCTAGAATCTCTTTTGAACCAAAAGATTGTTAAAGATTTCAAAATTTATAGTGGCGTTAAATCGGGGTTGGGTAATAAGGTGTTTGAGAAAAAAGTTGAATCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGCAGAGATGAAGACAAAGATATGATCTTTAGTTGGCTGACATCTGACACTAATGATACTAAGCTCTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATATATACAATGATCCAAAGACAGACGAAGCAAAATTTGATGAAAAAGCTTGGGTTTGCGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACGAACTCAAGAGATGACAGTGAAGACCTAGAAATGGTTCATGGAAAATTGAAAAAAAGGTTATTCGGAAGAAAGTTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACCGCAACAAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTCTTGTCACAACACGCAGTAAAAAAGTTGCTTCTATCATGCAGTCAACCTACATGCACCCACTAAAGCAATTAGATGAAGATCACAGCTGGCAAACTTTTACTAAACATGCTTTCCAAGATGAAAACTCAACGTTGAATTCTGAGATAAAGGAGATTGGTATTAAGATAGTTGAAAAGTGCCAAGGATTGCCTCTGGCCCTTGAAACAATAGGATGCCTTTTGCAGTCAAAGTCATCTGTTTCAGAGTGGGAAGGCGTTTTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATTGTCCCGACTTTGTTGTTGAGCTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTCGCTTATTGTGCATTATTCCCGAAGGACCATAGGTTTGACAAGAAGAGCTTAATTTTCTTATGGATGGCTCAAAATTTTCTACATTGCTCTCAACAAAGCATGTCTCCAGAAGAAGTCGGTGAAAACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAACAAATAATTGGGTACAAGAAAACATATTTTGTCATGCACGATCTTATGAATGATTTGGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGTGTTGATGGTGAAAAAAGAGTATCAAGGAAAACCCGTCACTTATCATATATAACCGGTCCTATTCAATATTATACGAGTTTATGTGATGCTAAAGGGTTACGGACATTTATAAATTTTCAGAGGTGTTGTGAGATGTCAATTGAAGAATTAATCGTCAACTATAAGTTCTTACGGGTCTTATCATGGCATTGGTGTATTAAGGTGCCTGACACTATAGGGGATCTTATACATCTGCGTTCATTAGACCTTTCAGGTACCGACATAGAGAGACTTCCTGATTCAACCTGTTCACTCTATAACTTGCAAGAATTGAAGCTAAACAAGTGTCTAAATTTGAAGGAGCTGCTCTTGACTTTGCATGAGCTCACTAATTTGCGCCGTCTTGAACTTATGGGAACTACTTTAACAAAGGTTCAACTCCGTTTAGGAAAGTTGAAGAATCTTCACGTGTGGATAGACAAGTTTGAGGTTGGCAAAAATAGTGAGTTCAGTATTCAACAATTAGGAGAACTTGATCTTCATGGAGAGCTGTCAATTACAAATCTTGAAAATATCACAAATCCCTATAAGACGAATTTCAAGAATAAAATACATATTGTGTGGCTGCGTTTACAATGGAATTTGAATAGGAACAATGACGATTCAATAAAAGAAAGAGAAGTAATTGAGAATCTGCAACCTTCCAGATATTTGAAGCACTTATCAATCGATGGCTATGGTGGCACACAATTTCCCCATTGGTTATCCAATAATTCTCTATCGAATGTGGTGTCCTTAACCTTGAATGACTGTAAACATTGCGTAATTTTGCCTTCCCTTGGACTTTTGACATTTCTCAAGCACTTGAAAATAGATGGCCTTGATCAAATAGTGAGGATAGATGATGAATTTTACGGGAATAGCTCTTTTGCATTTGAATCCTTAAAAACATTGAGCTTTACTGATATGAAAGAATGGGAAGAATGGCAATACATGAAGGGTGCTTTTCCACGTCTTCAAAGTCTTTCTCTGAGGAATTGTCCCAAGTTAAAAGGGAACTTGCCAGAACAACTTTCTCTTCTAAAGAAACTAGATATAATAGACTGCGGACAACTTGGGGCTCCGATTCCGAGGGCCGATACTCTTGAATACTTGATTATTTATTCTTGTCCGGGCATTAATATTCCCATTAACCATTGGTACCATTCCCTTGTTGAATTGGATATCAGATTTGCTTGTGACTCTCTCACTACCTTTCCTCTAGATTTGTTCCCAAAACTCCGCAAGCTTTGTTTACTCGAGTGTCGTAACCTACAGATGATATCTCAGGAGCACCCTCACAATCATTTGGAGAGATTGAGCATTGAAAAATGCTCTGAATTTGAATCATTTCCCAATGAAGGATTATTTGCACATCAGCTAAAGACATTTTTTATTGCAGAATTGGAGAAATTGAAGTTAATGCCTAAATGCATGTCTGCCCTTCTTCCATCTCTTAATCCTCTGTACATACGCAATTGTCCAGTGGTGGAATTGTCCGACGGATGTTTGCCATCAAATGTAAAAGAAATGTATCTCCGGAATTGCTCCAAACTTGTGGCTTCCCTAAAGGGCGCTTGGGGAACCAACCCTTCCTTAAATATCTTGTATATTGGCAATATGGATGTGGAGTGTTTTCCGGGTGAAGGTTTGCTCCCACTCTCTATTAGTAATCTAGAGATAGCTGATTGTTCAAATCTTAAGAAACTGGACTACAGGGGTCTCTGCCACCTCTCCTCTCTTCAGAAATTGATTCTTCGTAACTGTTCTATACTCCAATGCTTGCCAGATGAGGGTCTGCCCGAATCCATTTCACAACTCAATATTATAGGTAGTATGTCACTCGAACAGCGGTGCAAGAAACAAGAAGGTGAAGACTGGGAAAAGATTGCTCACATTAAATCCATTATTGTTGATTACAAACAAGCTCAATGCCCCTACTTAGGCCAAGCAGGTGGTGGTGTGGGAGGAGTGGCGCTCAATGCCCCAAGAAGGGCGCCCAAGTGTGATGCGGCACTAGGAATGTTTGCGCTCAGGCGGCCTCCAAGAGGGGCATCAAGGCGTTCATGCGAGCCTATGGCACTGAGGGCCCCAGAAAAGGGCGCTCAGGCATCCTGCGATCTCCTGAAACTTGTCATTGTTCCTGACATCACCGGTGTGGCTACTGGTCCAAATGCGAACATCTTCAAAAACTACTTAGGAGTATTGGAACGTGACCGAATATTCATCCTTAGTCCATCTTTTGATCATGTGTTTGAGAGACAAAGAAGATATTCACGGAATGATCTTCTCATCAAAAGTTGTGCCAAAGAGATCATACAATCTTCTTTTGATAAAGCAATGAAAAAACCTCAACCTACGACAACCACCTATGACAAAGGCTACAAAGAGCTGAAAGTCAAGACAAGCATGTCTAACAGCTAA 3966 0.3976 MPVLETLGGALFGAVLQVLFHKLDSHQVLGFFHGRNLDEKLLKKLKRKLMDVNAVIDDAEQKQFSNSLVKEWLDEVRDVLYDAEDMLDQIDYEFSKTKLGAEFQTSSSKVHNFESKIIALLDDLESLLNQKIVKDFKIYSGVKSGLGNKVFEKKVESTSLVAEEVIYGRDEDKDMIFSWLTSDTNDTKLSILSIVGMGGMGKTTLAQHIYNDPKTDEAKFDEKAWVCVSDAFDALRVSKAIIGAFTNSRDDSEDLEMVHGKLKKRLFGRKFLLVLDDVWNEDRNKWKALQTPLTFGAKGSKILVTTRSKKVASIMQSTYMHPLKQLDEDHSWQTFTKHAFQDENSTLNSEIKEIGIKIVEKCQGLPLALETIGCLLQSKSSVSEWEGVLTSEIWDLPIEDSKIVPTLLLSYYHLPSHLKRCFAYCALFPKDHRFDKKSLIFLWMAQNFLHCSQQSMSPEEVGENYFNDLVSRSFFKQIIGYKKTYFVMHDLMNDLAKYVSGEICYRLGVDGEKRVSRKTRHLSYITGPIQYYTSLCDAKGLRTFINFQRCCEMSIEELIVNYKFLRVLSWHWCIKVPDTIGDLIHLRSLDLSGTDIERLPDSTCSLYNLQELKLNKCLNLKELLLTLHELTNLRRLELMGTTLTKVQLRLGKLKNLHVWIDKFEVGKNSEFSIQQLGELDLHGELSITNLENITNPYKTNFKNKIHIVWLRLQWNLNRNNDDSIKEREVIENLQPSRYLKHLSIDGYGGTQFPHWLSNNSLSNVVSLTLNDCKHCVILPSLGLLTFLKHLKIDGLDQIVRIDDEFYGNSSFAFESLKTLSFTDMKEWEEWQYMKGAFPRLQSLSLRNCPKLKGNLPEQLSLLKKLDIIDCGQLGAPIPRADTLEYLIIYSCPGINIPINHWYHSLVELDIRFACDSLTTFPLDLFPKLRKLCLLECRNLQMISQEHPHNHLERLSIEKCSEFESFPNEGLFAHQLKTFFIAELEKLKLMPKCMSALLPSLNPLYIRNCPVVELSDGCLPSNVKEMYLRNCSKLVASLKGAWGTNPSLNILYIGNMDVECFPGEGLLPLSISNLEIADCSNLKKLDYRGLCHLSSLQKLILRNCSILQCLPDEGLPESISQLNIIGSMSLEQRCKKQEGEDWEKIAHIKSIIVDYKQAQCPYLGQAGGGVGGVALNAPRRAPKCDAALGMFALRRPPRGASRRSCEPMALRAPEKGAQASCDLLKLVIVPDITGVATGPNANIFKNYLGVLERDRIFILSPSFDHVFERQRRYSRNDLLIKSCAKEIIQSSFDKAMKKPQPTTTTYDKGYKELKVKTSMSNS 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01035 1321 FunFam Probable disease resistance protein At1g61300 150 319 - -
Vimu5g01035 1321 Gene3D - 325 410 IPR042197 -
Vimu5g01035 1321 PANTHER DISEASE RESISTANCE PROTEIN RP 42 848 IPR044974 GO:0006952
Vimu5g01035 1321 SUPERFAMILY L domain-like 487 869 - -
Vimu5g01035 1321 Gene3D Ribonuclease Inhibitor 530 892 IPR032675 -
Vimu5g01035 1321 Gene3D - 146 321 IPR027417 -
Vimu5g01035 1321 PRINTS Disease resistance protein signature 857 873 - -
Vimu5g01035 1321 PRINTS Disease resistance protein signature 191 206 - -
Vimu5g01035 1321 PRINTS Disease resistance protein signature 265 279 - -
Vimu5g01035 1321 PRINTS Disease resistance protein signature 362 376 - -
Vimu5g01035 1321 Gene3D - 32 129 - -
Vimu5g01035 1321 Pfam Rx N-terminal domain 13 106 IPR041118 -
Vimu5g01035 1321 SUPERFAMILY L domain-like 883 1145 - -
Vimu5g01035 1321 Gene3D Ribonuclease Inhibitor 898 1109 IPR032675 -
Vimu5g01035 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 425 IPR027417 -
Vimu5g01035 1321 Coils Coil 110 130 - -
Vimu5g01035 1321 Gene3D - 411 498 IPR036388 -
Vimu5g01035 1321 Pfam NB-ARC domain 170 389 IPR002182 GO:0043531
Vimu5g01035 1321 FunFam Probable disease resistance protein At1g63360 411 498 - -
Vimu5g01035 1321 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01035 Vimu-Chr5 16699162 16707068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01035 192 386 WRKY Transcription Factor Family AT5G45050 25.728 5.16e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01035 - - vun:114168932 1520.75