Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01028 ATGTCTGAAGAGTCAGTGAGTATTGTGGTGATCCACTATGCATCAAGAGACTTCAACACAAGGGCCATAAAAGTGGTCATGCAGGGATTTTCACTTGGTCGTGGAGACAAGCTTACACTTCTTGTAATTCTTCGCCAAGCTCATAGTCCCAGTAGGCTTCCCTTCATTGCACCTGCAAAATTGCTTGGATTATTTGAGACTGATCACAAAATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAGAGCTTCTTAATAATGCAAGCTTAAGGGAGATTTCTGAGCTGTGTGAAGCAGACAGGATCCAATTCCGGATAGAAGTTCTGCAGGGTAAATTACCAGAGGTTGCTGTAAATGCTGCCATCCGTCTGGAGGCAACATCAGTGATAATTGATAGACAGATGAAGAAATATAAGAAGGAATTCAAGCAGAGTCTCTTTTGTTCTTTGCTAATAATGAAACGTGACAACTCTGTGAAACACTTGAGAGGGCCAAGGGAAACACATTTGTGTGATGGAAGCAATGGAAATGCAAGATGTGTTAGATGTCCTATATCTAAATCTCCCCGAAGAGTATGGCAAGTGACAAATTCCTGCTCCAATACCAGCTCTTCATTTCCTACTCTTGCAAAGGGTGGTTGCCCCCAACCCCAATTTTATTCTCAAATAAAACAAATCCCTGAAAATAGAGTAGAAGACATGGAAAGAGGGTATTGCCTACTATCCATTACTGATACTCAAAAAACTAATCATACTGAAGAGTATTACATAGAAACACCAGCAGAACATAGCAACAACCCTGAAGCATATCAAATAGTTGAACAATTCCAAAATTCTGTTTGCTCGGTGTGCAAGAACAGAAGACCAAAATTTGAAGTGATGAAAGAATTCACATATGCAGAGCTGCATGAAGCTACACAAGGTTTTTCACCAAAAAACTATTTGTCCGAAGGAGGATTTGGTTCTGTCTACAAAGGAAGGCTGCAAGGAGGACTAAGGATTGCTGTTAAGCAACATAAATGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAATCTGAGGTCAATGCACTCAGCAGAGCTATACATGAGAATGTGGTCATGCTGCGCGGATCTTGTTCAGAAGGAAATAACCGGCTTCTTGTGTATGAATTTATTTGCAATGGCTCTCTTGATCAACATTTATCACAACACTCACGTAGGCCACTTACTTGGAAAGAAAGGATCAAAGTAGCTATTGGAGCTGCAAGAGGCTTGTTGTACTTGCATCAGAACAATATAATACACCGAGATATGAGGCCTAGCAACATCCTTGTTACACATGATTATGAAGCAATGCTTGGAGATTTTGGTCTGGCTAGAACTGAACAAATGGACTCCTTATACTCCACAGATGTTGTTGGAACTATAGGGTATTTGGCACCAGAATATGCAGAGTCAGGAAAACTGTCAACCAAGACAGATGTGTATGCTTTCGGTGTGGTTCTTCTTCAGCTAATAACTGGAATGAGGACTGCAGACAAACGTCTTGGGGAAAAAAGTCTTGTGGGATGGAACTTAGTTGCTATTGCTGACTATAATAGGAGAATTGATGATTTCAAACTCTCAAGGTACAATAAATTTTTCCATGCCATGTTACAATTTGACTTGGCATTTCCTTACATCATTCCAATGTACAAGTTCCTTTCAATCATTAACCCTCTTGCTTTCTTTCAGGCTAGGCCACTACTCAAAGAAAGGAACTATCCAGATCTAATTGATGAAAGGATGTTGGATAATCACGATTGCCATCAGCTTTTCTGGATGATTCGTCTGGCAGAAAAATGCCTCAGCAGGGATTCTCAGAGGCGATTATCAATGGATACAGTGGTGAATGCCTTAACTCATATACTGGAAGGAAACACATGCAGTGTTGTTCTAAGAGACTGCTCTCCAGCACAATCAGATTCATCATATGATATGTCAGACTTGCTTATCTCAGATACCTCTCAGGAGATAGTATGTGAAGATACAAGCAACTATGCAGGATATGCTTCTATGTGCTTCAGACCACCACCATCTCCTCCACTAGGAAGCACTTCCTCAAGTACATCAAGCGTGTTCACAGGGCTGAGTGAATCTCCAATAGATGATTTGTCCAATAATAAGAATAGGGGTAAAAGGGCAAATGAACAAGGTGGGATACTCTAA 2184 0.4071 MSEESVSIVVIHYASRDFNTRAIKVVMQGFSLGRGDKLTLLVILRQAHSPSRLPFIAPAKLLGLFETDHKIVEEEVAKKKEELLNNASLREISELCEADRIQFRIEVLQGKLPEVAVNAAIRLEATSVIIDRQMKKYKKEFKQSLFCSLLIMKRDNSVKHLRGPRETHLCDGSNGNARCVRCPISKSPRRVWQVTNSCSNTSSSFPTLAKGGCPQPQFYSQIKQIPENRVEDMERGYCLLSITDTQKTNHTEEYYIETPAEHSNNPEAYQIVEQFQNSVCSVCKNRRPKFEVMKEFTYAELHEATQGFSPKNYLSEGGFGSVYKGRLQGGLRIAVKQHKCASLQGEKEFKSEVNALSRAIHENVVMLRGSCSEGNNRLLVYEFICNGSLDQHLSQHSRRPLTWKERIKVAIGAARGLLYLHQNNIIHRDMRPSNILVTHDYEAMLGDFGLARTEQMDSLYSTDVVGTIGYLAPEYAESGKLSTKTDVYAFGVVLLQLITGMRTADKRLGEKSLVGWNLVAIADYNRRIDDFKLSRYNKFFHAMLQFDLAFPYIIPMYKFLSIINPLAFFQARPLLKERNYPDLIDERMLDNHDCHQLFWMIRLAEKCLSRDSQRRLSMDTVVNALTHILEGNTCSVVLRDCSPAQSDSSYDMSDLLISDTSQEIVCEDTSNYAGYASMCFRPPPSPPLGSTSSSTSSVFTGLSESPIDDLSNNKNRGKRANEQGGIL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01028 727 FunFam Proline-rich receptor-like protein kinase PERK8 270 383 - -
Vimu5g01028 727 Pfam Protein tyrosine and serine/threonine kinase 312 501 IPR001245 GO:0004672|GO:0006468
Vimu5g01028 727 PANTHER OS01G0253100 PROTEIN 250 629 - -
Vimu5g01028 727 SUPERFAMILY Protein kinase-like (PK-like) 294 648 IPR011009 -
Vimu5g01028 727 ProSiteProfiles Protein kinase domain profile. 308 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01028 727 ProSitePatterns Tyrosine protein kinases specific active-site signature. 425 437 IPR008266 GO:0004672|GO:0006468
Vimu5g01028 727 MobiDBLite consensus disorder prediction 685 727 - -
Vimu5g01028 727 Gene3D Transferase(Phosphotransferase) domain 1 384 640 - -
Vimu5g01028 727 Gene3D Phosphorylase Kinase; domain 1 270 383 - -
Vimu5g01028 727 MobiDBLite consensus disorder prediction 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01028 Vimu-Chr5 16582558 16586875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01028 296 540 Trihelix Transcription Factor Family AT5G38560 49.020 5.77e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu5g01028 PK_Tyr_Ser-Thr 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01028 - - vum:124838318 1192.18