Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01027 ATGGGACGAGTGAATAATGATATTGAGGATGAAGTGCTTCCCAGTGATATGAGTGCAGCACAGTCGAATGGTGAGAGTTATGAAGGAAGTACCAGCGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAAAATGGGGAGGGGAATTGGAATGCAGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAAATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAGCGGGCTGGGTTGCCACTTTACCCTCCAGAAGTATCTTTGCAAGGTTTTCAAGAGAGTCAGCGCAACCAAAGCAATGGTGGACTTAATGGTGGCAATAGAATGCATCTTGATATGTTGCAGAAAAATAGTTATGAGATGCATGGTGCTATATTTGATAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTAAGTTTTCCGATGTTTCTGTTTGTGGCAATATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGCATTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACCGTTTAATGGTTCCAAGGATAAGAAAAACAATGGTCTATATCCATTTTGTCAAAATCGGGACAATAATTCTGATAAGATTGCACACTCATTTGGAATGCAAGCACTCCTTGATCCTGGTCCCTCCTCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGCTGGGGTACATCTCCTCCGCCTCCTATGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAGGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGTGACAACTCTGCTTTGAATGTATACGAGACAGAATGGGAAGATTACGCTGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTATAGGCAGTGAGAATTCATTGGACGAACAGCTATCTCTCCAGACATTTACTGGCAACATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGACAATGAAAATCAAACCTTGTCCTTCTTGAATATCACTCGTCCAGACTTATTGTTTGCTTCAGATTGGCATGAGCTAGGTTTCGGGCATGGCAAGAACCAGGCCGTCACAACTGATACAACAACGACCCTTCTTGGAGACGATTTTGCCGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCATCGGCAGCCAATAATATGCATGCCCTCTGTCACCTATCCGATCTTGGTTAA 1668 0.4359 MGRVNNDIEDEVLPSDMSAAQSNGESYEGSTSVVLKKGPWTSTEDDILVDYVNKNGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQGFQESQRNQSNGGLNGGNRMHLDMLQKNSYEMHGAIFDSLKDNQGILPYAPKFSDVSVCGNMLKGLDSSSQYCSIMPPASPKNKRLRESTIPFNGSKDKKNNGLYPFCQNRDNNSDKIAHSFGMQALLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELHLGSWGTSPPPPMLESVDDFFQSHTPISTLESDCSSPQNSGLLDALLYQAKTLSSSRNHCSDKGSNSSTATPGDRGDNSALNVYETEWEDYADPVSPFGATSILNECPALIGSENSLDEQLSLQTFTGNIPKLEFVDQVWTPDNENQTLSFLNITRPDLLFASDWHELGFGHGKNQAVTTDTTTTLLGDDFAADHKHMTSGTSQSSQVWGFGSCASAANNMHALCHLSDLG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01027 555 FunFam Transcription factor GAMYB 92 138 - -
Vimu5g01027 555 FunFam MYB-related transcription factor 36 89 - -
Vimu5g01027 555 Gene3D - 36 89 - -
Vimu5g01027 555 SMART sant 89 137 IPR001005 -
Vimu5g01027 555 SMART sant 36 86 IPR001005 -
Vimu5g01027 555 CDD SANT 39 84 IPR001005 -
Vimu5g01027 555 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vimu5g01027 555 CDD SANT 92 133 IPR001005 -
Vimu5g01027 555 MobiDBLite consensus disorder prediction 16 31 - -
Vimu5g01027 555 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Vimu5g01027 555 MobiDBLite consensus disorder prediction 1 31 - -
Vimu5g01027 555 MobiDBLite consensus disorder prediction 380 403 - -
Vimu5g01027 555 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Vimu5g01027 555 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Vimu5g01027 555 MobiDBLite consensus disorder prediction 380 400 - -
Vimu5g01027 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Vimu5g01027 555 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Vimu5g01027 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Vimu5g01027 555 Gene3D - 92 138 - -
Vimu5g01027 555 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 19 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01027 Vimu-Chr5 16575352 16578301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01027 22 537 MYB Transcription Factor Family AT3G11440 44.000 2.99e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01027 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01027 K09422 - gmx:100810415 850.506