Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01019 ATGGAGTGGCTTCAGCAATTCCTAAATTTTCTCTTCTTAGCTTCTCTTCTTCTCATCAGCACCACTGCAATTTCAGATCAAACTCCAAAGCATTATGTTGTTTACATGGGAAATTCATCACCCAACAACAAAAGGGTACAAGGCCAAATACCAGAATCAGATCATCTGCAGCTACTGTCATCAATTATTCCAAGTGAAGAAAGTGAGAGGATAGCCCTGATCCACCATTTCAGTCATGCCTTCAGTGGATTCTCTGCCATGCTTACAGAGAGTGAAGCTTCTGCACTGTCTGGTCAGAATGGTGTGGTGTCAGTGTTCCCAGATCCGATGCTTGAGTTGCACACAACACGATCTTGGGATTTCTTGGAGTCAGATTTGGGATTGAAGGCTCCTCATTATGTCACTTCCAAAACCCTAATCCAACACTCTTCAATTGATTCCATTATTGGTGTCATAGACACAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGGAGATCCCTTCAAGGTGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCCAATTGCAATAGATTCTACAATATTGAAGCTACACCAGGTAGCAACAAGACTCAAATAGAAGCAAGCAAAGGTTCCCCAAGAGATTCTGTTGGACATGGCACTCACACTGCATCAATTGCAGCTGGTGTTTATGTGAAGAATGCTAGTTATTATGGTTTAGCACTAGGCACAGCAAGGGGTGGTTCACCTTCTACTAGGATTGCTGCTTATAGAACATGCTCAGAAGAAGGATGCTCTGGTGCCACCATTCTAAAGGCTATTGATGATGCTGTAAAGGATGGAGTAGATGTGATCTCAATCTCAATTGGACTCAGCTCACTGTTTCAATCAGACTTTTTGAGTGATCCCATTGCCATTGGAGCATTTCATGCAGAACAAATGGGGGTTATGGTGGTGTGCTCAGCTGGCAATGATGGCCCTGATCCTTTCACAGTTGTGAACACTGCACCATGGATATTTACTATTGCAGCTTCTAATATTGATAGGAACTTCCAATCAACTATTGTCCTTGGAAATGGAAAGTATTTCCAAGGTACAGGCATTAACTTCTCAAATCTTACTCATTCAAAGATTCATAACCTTGTCTTTGGAGAGCAAGTAGCTGCCAAATTTGCCCCTGCATCAGAAGCTAGGAATTGTTATCCTGGATCATTAGATTACAACAAAATTGCTGGCAACATTGTTGTTTGTGCCAATGATGATCCAACTGTTTCAAGGCGAATCAAGAAGCTAGTTGTACAAGATGGAAGAGCCATAGGGTTGATACTCATTGATGAGGACAACAAAGATGTTCCCTTTGATGCAGGTGTCTTTCCCTTCACTGAGGTTGGAAATCTTGAAGGACATCAGATCCTACAATACATAAACTCTACCAAGAACCCAACTGCAACAATTCTTCCAACAACAGAAGTTGTTAGATATAAGCCTTCACCAATTGTTGCATCTTTCTCATCCAGAGGTCCTTCAAGCCTTACAGAAAACATTCTCAAGCCAGACGTCATGGCTCCAGGAATTAGCATTTTGGCTGCTATGATTCCTAAAAGTACTGACCAGGGAAGTGTTCCAATTGGAAACAAACCATCCTTGTTTGGCATAAAATCTGGTACATCTATGGCTTGCCCACATGTGACAGGTGCAGCAGCATTCATTAAATCAGTACACCAAAATTGGAGTCCTTCAATGATAAAATCAGCATTGATGACAACAGCTACGAATTACAACAACTTGAGGAAGCCTCTCACTAACAGCTCAAACCACATTGCTGACCCACATGAAATTGGAGTTGGTGAAATTAATCCAGTCAAAGCTCTCTACCCTGGATTAGTTTTTGAAACAAACATAAAAGACTATCTCAGATTCCTCTGTTACTTTGGCTATTCACAGAAAAAGGTAAGGTCAATGTTTAAGACCAACTTTGATTGCCCCAAGAACTCCTCCGAAGACCTTATATCCAACATCAATTATCCATCAATATCTATAAGTACACTTAAAAGGCAACAAAAATCAAAAGTGATCACAAGAACAGTTACCAATGTTGGATCCCCTAATGCCACATACACTGCAAAAGTGAGATCACCTGAGGGATTGGTTGTGAAGGTCATCCCCAATAAACTTGTGTTTTCTGAGGGTGTTCAAAGAATTACCTACAAAGTCTCATTCTATGGCAAGGAGGCAAATGGTGGATACAATTTTGGATCTCTAACATGGCTTGATGGCCACCATTATGTTCATACAGTCTTTGCAGTCAAAGTTGAATAA 2322 0.4121 MEWLQQFLNFLFLASLLLISTTAISDQTPKHYVVYMGNSSPNNKRVQGQIPESDHLQLLSSIIPSEESERIALIHHFSHAFSGFSAMLTESEASALSGQNGVVSVFPDPMLELHTTRSWDFLESDLGLKAPHYVTSKTLIQHSSIDSIIGVIDTGIWPESPSFRDEGIGEIPSRWKGVCMEGHDFKKSNCNRFYNIEATPGSNKTQIEASKGSPRDSVGHGTHTASIAAGVYVKNASYYGLALGTARGGSPSTRIAAYRTCSEEGCSGATILKAIDDAVKDGVDVISISIGLSSLFQSDFLSDPIAIGAFHAEQMGVMVVCSAGNDGPDPFTVVNTAPWIFTIAASNIDRNFQSTIVLGNGKYFQGTGINFSNLTHSKIHNLVFGEQVAAKFAPASEARNCYPGSLDYNKIAGNIVVCANDDPTVSRRIKKLVVQDGRAIGLILIDEDNKDVPFDAGVFPFTEVGNLEGHQILQYINSTKNPTATILPTTEVVRYKPSPIVASFSSRGPSSLTENILKPDVMAPGISILAAMIPKSTDQGSVPIGNKPSLFGIKSGTSMACPHVTGAAAFIKSVHQNWSPSMIKSALMTTATNYNNLRKPLTNSSNHIADPHEIGVGEINPVKALYPGLVFETNIKDYLRFLCYFGYSQKKVRSMFKTNFDCPKNSSEDLISNINYPSISISTLKRQQKSKVITRTVTNVGSPNATYTAKVRSPEGLVVKVIPNKLVFSEGVQRITYKVSFYGKEANGGYNFGSLTWLDGHHYVHTVFAVKVE 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01019 773 PRINTS Subtilisin serine protease family (S8) signature 144 163 IPR015500 -
Vimu5g01019 773 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Vimu5g01019 773 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
Vimu5g01019 773 Gene3D Peptidase S8/S53 domain 147 638 IPR036852 GO:0004252|GO:0006508
Vimu5g01019 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 114 IPR037045 -
Vimu5g01019 773 SUPERFAMILY Subtilisin-like 146 626 IPR036852 GO:0004252|GO:0006508
Vimu5g01019 773 CDD Peptidases_S8_3 111 592 IPR034197 -
Vimu5g01019 773 Pfam Peptidase inhibitor I9 31 114 IPR010259 -
Vimu5g01019 773 Pfam Fibronectin type-III domain 673 770 IPR041469 -
Vimu5g01019 773 Pfam Subtilase family 147 596 IPR000209 GO:0006508|GO:0008236
Vimu5g01019 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
Vimu5g01019 773 ProSiteProfiles Serine proteases, subtilase domain profile. 118 625 - -
Vimu5g01019 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 766 IPR045051 -
Vimu5g01019 773 Gene3D - 349 493 - -
Vimu5g01019 773 FunFam Subtilisin-like protease SBT1.5 146 418 - -
Vimu5g01019 773 Gene3D - 642 772 - -
Vimu5g01019 773 CDD PA_subtilisin_like 355 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01019 Vimu-Chr5 16359701 16372744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01019 32 770 Subtilisin-like Serine Gene Family AT1G20150 43.444 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01019 K25898 - gmx:100781053 1296.57