Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00968 ATGGAGGAAAGAGTCATACGAAAGGGTGGCTATGGAGGGATCTCGCCTTCAGCTGCCAGAGGTCACTGGAGATGTGCTCCACCTCCTAATAACTGCCTCCCTCTGTCCAACTCACTCCTTAACTTAGGGTTGCGACTTTGGTGGCGGTCAGCCGGTTCGCTGCAGTTTGACGACACGAGTTTGGTGGTGCGGACGCTGACGGAGGGGTGCGGTTTTTGGGGGTTAGCGTGTCGAGGGCGTTGTAGTGAAGTGGTGTTAGTTTGGCGACTTGAGGTTGAGGGAAGGGAGGGAGAGGCCTACCACTCTGCCGTTTGGGGAGCACTCGACGCCGAGCCCGTCATGGTCCTCCGTGTCGACAAGGAAAAGGATTACATCGATCTCAGAGAGTGTAGGATCTACGAAGAGGATATTCAGCCCTGTGAGGAGAGATACAACAAGAGTAAGCTCGTCCACTCCATCATGCGCCAAATTGCTGAAATCCTCAACATCGATTTGGAGGAGCTCTATGTTCACATTGGAGGTCATGCTTTTGAGAACCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCATACAAGCGGTGACTATGACCAATTGGGAGATGATTTAACAGGTCATAGCTGCAACACCAGGGGTGGATATCATGGAAGGGTCGTGGCTTTAGATCAAGTGGACCAATCCAAGCAGTTGCATGAGGCAACTAGTTGTCTGGCATGA 732 0.5164 MEERVIRKGGYGGISPSAARGHWRCAPPPNNCLPLSNSLLNLGLRLWWRSAGSLQFDDTSLVVRTLTEGCGFWGLACRGRCSEVVLVWRLEVEGREGEAYHSAVWGALDAEPVMVLRVDKEKDYIDLRECRIYEEDIQPCEERYNKSKLVHSIMRQIAEILNIDLEELYVHIGGHAFENPACYSWNLLLELAFHTHTSGDYDQLGDDLTGHSCNTRGGYHGRVVALDQVDQSKQLHEATSCLA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00968 243 Gene3D Translation initiation factor 2; subunit 1; domain 2 134 181 IPR024054 -
Vimu5g00968 243 SUPERFAMILY eIF2alpha middle domain-like 133 173 IPR024054 -
Vimu5g00968 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 110 188 IPR011488 GO:0003723|GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00968 Vimu-Chr5 14364009 14375299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00968 111 178 Eukaryotic Initiation Factors Gene Family AT2G40290 73.333 1.01e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00968 K03237 - vra:106765684 209.92