Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00959 ATGGGTCGCACAATTAAGGGCACTCTTTTGGTTGACAAAAAGCTTCTTCCTAGGACAATACAGGTTAGGCATTCAATGATTAAAGTTGAGAAAGACCTTAGTCTGAATATGCAAAGCATAAATTCATTGGAGGTAGTGAACACAAGCATCAAGCCAAATAGAACTTATTTATCTAAAAATCTGATTACACTTTTGAGCTATGGAGGAGTGCCGAATGAATTCTTCAAGGCTTTACTAGAGAGTAATTTGGAAGATGCAAATCATGTTTTCTCCAACAAGCGTGTTGCACTTAGAGCATCCAATAATAATGGCACCATGGACGAATACATCGCGGCAGAAATGATTTTATGTGGAATTCCTCTGGACGAGCCACTTTTGCAGTATCATCTATCTATACTTGCAAGGGAGGAACGCAAGAAGCTTAGAGGAGGGAAGCTATATATGCCTGAATGTTTCTATTTAATGGGGACCATAGATCCCACTGGATGCCTAGAGAAGGATCAAGATTGTATAGTACATGGGAATGGCCAAATTAACGGGGATGTGTTGGTCTACAGAAAAACAGGTTTACATTTTGGCGACATTCACATAATGGGTGCCACATATGTGGATAAGTTAGAATCTTTTGTTGGACATAGCAAGTATGCAAATTTTTTCCCATGTGTTGGGACTCGCTCAGTGGCAGATGAAATTGCTGGAGGTGATTACACAGCAATCGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTATTCTGAATGGAATGAAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCGTAGTGAAATATTTTGA 864 0.4016 MGRTIKGTLLVDKKLLPRTIQVRHSMIKVEKDLSLNMQSINSLEVVNTSIKPNRTYLSKNLITLLSYGGVPNEFFKALLESNLEDANHVFSNKRVALRASNNNGTMDEYIAAEMILCGIPLDEPLLQYHLSILAREERKKLRGGKLYMPECFYLMGTIDPTGCLEKDQDCIVHGNGQINGDVLVYRKTGLHFGDIHIMGATYVDKLESFVGHSKYANFFPCVGTRSVADEIAGGDYTAIVQSLSPLIPPIFSSDESACYSEWNEAMERLTGWKRDEVIGKLLRSEIF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00959 287 ProSiteProfiles PAS repeat profile. 235 287 IPR000014 -
Vimu5g00959 287 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 283 IPR035965 -
Vimu5g00959 287 CDD PAS 246 286 IPR000014 -
Vimu5g00959 287 Gene3D PAS domain 249 286 - -
Vimu5g00959 287 Pfam PAS fold 235 286 IPR013767 GO:0006355
Vimu5g00959 287 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 236 IPR007855 GO:0003968
Vimu5g00959 287 Pfam RNA dependent RNA polymerase 5 236 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00959 Vimu-Chr5 13869981 13870844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00959 234 287 Histidine Kinase Gene Family AT4G18130 72.222 4.40e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00959 K11699 - gmx:100801632 359.377