Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00950 ATGTCTCCTGAATATGCCATGGAAGGAATTTCTTCTACAAAATCTGATGTCTATAGTTTTGGAGTGTTGCTACTTGAAATCGTGAGTGGAAGAAGAAATACTAGCTTCTATGATGTTGATCACCCTCTTAATCTAACAGGACATGTAGAAGGTGCAGTTATGCAATTGGTGGATTCATCATTGAGTGAGTTATTTGATCTTGACGAAGTGAAAAGATGCATTCATGTGGGTCTCTTATGTGTATCACAATATGCAAATGATCGACCAAAAATGTCTGATGTTATATCAATGTTAACAAAAGAAAGTTCAATAGTTACCTTGCCTCAAAGACCTGCTTTCTATTGGGAAAGAGATTACTCTTATAAGAAAGTGTCTTATGAAGAGTTAAACACTGACTCTATGGAAGAAATTACTACTTCCTCTTGA 426 0.3545 MSPEYAMEGISSTKSDVYSFGVLLLEIVSGRRNTSFYDVDHPLNLTGHVEGAVMQLVDSSLSELFDLDEVKRCIHVGLLCVSQYANDRPKMSDVISMLTKESSIVTLPQRPAFYWERDYSYKKVSYEELNTDSMEEITTSS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00950 141 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Vimu5g00950 141 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
Vimu5g00950 141 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 128 - -
Vimu5g00950 141 Pfam Protein tyrosine and serine/threonine kinase 1 98 IPR001245 GO:0004672|GO:0006468
Vimu5g00950 141 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00950 Vimu-Chr5 13670113 13670636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00950 1 115 Receptor kinase-like Gene Family AT4G23290 49.587 1.47e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00950 PK_Tyr_Ser-Thr 5.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00950 - - vum:124831793 217.238