Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00943 ATGCTTCATCTTCAAAACCCACCAATTCGCAACCAGTTCTTCTCCCACTTCCTCAAACCAACCTTCCCTTCTATATTCAAACCTCGTCCCTTTTCTCTGACCAATCCACGTCCAACACATGCTATACCCTTTGTTAATGATGTTGCATCACCTTCATCATCACAAGCTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCCTGGACTTCACTTGGTCTCTCCGATATCATTTCTAGAGCGCTCTCTGATATTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGTTGTTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCATGAACATTCTCTACATGCTATGTCTGATCAGGAAGTGACCTCGACACAGAAAGTTCTGCCCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAAGATGGCCAGCAGTCTACGTAGGGATGATGATGAGGCGATAGTCAGTGTAGCTGCCATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGCAATTTATGCGCGGTGTTAAATATGTGGTGTTTGATGAAGCCGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAATTTGCTCCGCTTTGATGAAAAGGTCTTCTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAACGAAAGATGAATCTTCCTTGTCATCAGAAGTTGCTTTTGAAGGCGAAGAGGAACTTCAAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAGGATGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCAACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAACATATGTTTCCTGATGCTGAGTGGATTTGTGGAAACTATCTTCATCGCCACAATCCGAGGAAAATGATTAAATGTCTTAATGATGATTCTGAACTGGAGTTGAGAAAACTGGAATGTATGCGGACAAAATACTATGAAATGGACTTTTATGCTGATGTACGTGAGTCTGAAATTGATTTCAATGTGTTTGATCATGTGCATCATGTGCCTTTACAAGTTGCTGATTTTACTCCTTGTTTTGATCATTCTCATATCACAAATGCAACATTTACCATTGATACAATTCATATACCTGCATCTAATGCTCATGATGATAGATATGCAGTTTTTGATGATGTGAAAGTTGATATGGCTGATTTTGAAAATGCTTGTACTGATTTAGGATTAGAACTTGAACTTGAGTTTGCTAAGTTCTTAAATTCTGTGGAGCTAGGCAATGAAAAACTAACTGGTTGTACTTGCCTTGGGGGTGGTTGTGAAATTTGTGAAGAAATTAGTTCTGCCATATGTTCTGCTGCCAATTGTTTTGCAGGTGCAAAGGAAGAGTACATTATGTGCAAGCTGGATGGAAATGACTCTGGTGAAGCCACTGATTCTGCTGAGAACACAGCTAACATAAATAGCATTGTCCATCATCTAAAGGAAGTTGTAGACACTGAGACAGCTTTGGTGAAGGCAAGAGACGGTGTTAGTGCTGTTCAAGGAACCTGGAACACACAAAATCAGCAGCAATTGAATGGGGAGTCCTAG 1809 0.414 MLHLQNPPIRNQFFSHFLKPTFPSIFKPRPFSLTNPRPTHAIPFVNDVASPSSSQASNGRDTFFAEENVSWTSLGLSDIISRALSDIGLNRPSLVQASSVPSVMSGKDVVIAAETGSGKTYSYLVPLIDKLRDAHEHSLHAMSDQEVTSTQKVLPILCPNVQLCEQVVKMASSLRRDDDEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVFSRSKKSVAEFSTKDESSLSSEVAFEGEEELQTEATLEEDDTDKEDDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKHMFPDAEWICGNYLHRHNPRKMIKCLNDDSELELRKLECMRTKYYEMDFYADVRESEIDFNVFDHVHHVPLQVADFTPCFDHSHITNATFTIDTIHIPASNAHDDRYAVFDDVKVDMADFENACTDLGLELELEFAKFLNSVELGNEKLTGCTCLGGGCEICEEISSAICSAANCFAGAKEEYIMCKLDGNDSGEATDSAENTANINSIVHHLKEVVDTETALVKARDGVSAVQGTWNTQNQQQLNGES 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00943 602 CDD DEADc 80 262 - -
Vimu5g00943 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 69 97 IPR014014 GO:0003724
Vimu5g00943 602 Gene3D - 47 356 IPR027417 -
Vimu5g00943 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 255 IPR027417 -
Vimu5g00943 602 Pfam DEAD/DEAH box helicase 95 260 IPR011545 GO:0003676|GO:0005524
Vimu5g00943 602 SMART ultradead3 88 369 IPR014001 -
Vimu5g00943 602 MobiDBLite consensus disorder prediction 287 308 - -
Vimu5g00943 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 370 - -
Vimu5g00943 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 358 IPR014001 -
Vimu5g00943 602 MobiDBLite consensus disorder prediction 279 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00943 Vimu-Chr5 13545000 13547706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00943 59 254 Eukaryotic Initiation Factors Gene Family AT3G13920 25.359 6.80e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00943 - - gmx:100789323 584.719