Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00934 ATGGGAGTGTTGCTCTTATCTTGGAAGTTTCAATTCGTCAAATGTTTATATGTTGTCCAAGTATTACTAGAGTCTAGATTCTACAAACATCTTCAATGCAATACCATGGAGCCTAGAAATGAGGAGTTCCAGTCGGGATCTCAATCAGTAATTCAGGACCATATGGATGGCGTGCATAGTATTAGACGGCCATCTGAGTATAGCACATCAGATGTTAAACCGGTACTTAATTATTCAATACAGACAGGTGAGGAATTTGCTCTCGAATTCATGCGAGATAGGGTGAATCTCAGGAAGCCCATGTTTTCAAATGTTAGTGATTCCAATTCCAATTATGCAACTGGCTGCATGGAACTGAAAGGCGTCTTAGGCATCAACCACACAGCTTCTGAAAGTGGATCAGACATTTCTATTCTATCAAAAACTGAGAAAGGTCTGACAGAGTTTAACAGACCGAGTACATCATTACATGGAGACAGAAGCAATTATGGGTCAATTCGGTCAATACCAAGAGTTTCATTGAATCAGGAGAATAGTCGATTTGTACGTGGGTATGGGTCTTCTGTTGGTTCTGACAGCTCGTCAATGATGAAGTGTCTTTGTAGCTTTGGTGGCAGAATATTACCACGACCAAGTGATGGGAAGTTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTTATGCAGAAAGCATTGTTAATTTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTCGATGCTTTGGTATCAGTGTCGTCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCTTCTAGAAGATAGAGAGCGCTCAAAAAAACTTAGGCTGTTTTTGTTCTCTATGAGTGATTTGGAAGATGCTCATTTTTCTCTCAGTAGCATTAGTGATGACTCTGAGGTCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCAATAAACAGCTCAACCCCACTCGGTGTCAGTTTCTCAGCTGATGATCTGCATGAGTTGGAAAGGCAAACTTCACAGAGAGAGACTAATAATAGAGCTGCTGTAGAATCTGTAGGTGCCAGCGCTCCCTTGACTAACAAATCTGATCCTTCATTGCCTATTCATTCTTCACAAGCAGTTCTACCAAATGCCTCAAATTCTTATGAACTTGATCAACTTTCTTATGGTGACCAAATGCCTCAATTTGGGGATTATAGTCGTCAATATTTTGTTCACCATGGCCTTAATTCCACTCATAACCCTGTTGGAGAGACTTTTATTCCTATGGCTCCTCATCTGCTTAACAATCAACAAGGGGTTCAGAATGAAGACCATGTATCTAGTGGATTACAAATTCAAAATTCTCAGTTATCTGCAACGCAGGTGAAAAAGATAAGTGATAATTCAGTTAAGCAAGGGAGTGACTCTGAAAATGTTTTAACCTCAGAAACCACGTCTCCAGCTCCCTTACAAACCTCTGATAGTGGCTTAAAAAGTAATTTTCCTGAAGCATCGGTTGTAGTTACCATGCCTGAGGGACATCCACCTTCATTACCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGTTGTCTTCTACTTCTAGCAGTGCATTTGTTCCTGCTTATGTTGTTTCCCATCCAAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCCGAAAGAGTTTATTTTTCAGAAAGAACTCCGAGGGAGCAAGTGGAGTTGCTGAATCGTTCCTCAAAGTCAGATGACACACACAGTTCTCAACTTCATGTGTCAGATTTACTTTCTGATGTCAACCCAGAGGACCCAGTAACAGAATCTGGGGGCAACTTGCATCCAACTGACGAATTAGGTAATGCAGAAAAGCCCTTGCATGCAGATGGCCATACCACTGACAATGGGTTTTCTAAAAATCAAATGAGCAAACCGTTGCCTGATACAAACAGTCTTATTAAGTCAAAACTATCTGAGCTCACAGACCCTGAGTTGAAGCCAGTGTTGTCAAGTAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATCGTAAAGATAGCCAAATTAAGCCCTTGCTTGACGAAACTGAAACCAAGACCAAAACCAAAGATGGTAAATCAGATCTTCCTACTTTGCATCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCATCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCGGGGAAGGAATCAAATGATGGTTGTTTGGTGGAAGAACTACCTGTATCTGTAACTGGGAGTGTAACTAAAGATGTTAATCAAGATTTCCCCCAAAATGTTGTTTCCAAACAATCTCAAGGGGACATTCTTATTGACATTGATGATCGATTTCCCCGGGAATTGCTTTCAGATATGTTTTCTAAAGCAATACATGGAGAAGACCCCTCCAGTCTGCATCCATTGTCTGGAGATGGAGTAAGCTTAAGCGTAAATATGGAAAATCATGAACCCAAAAGATGGTCATATTTTCATAAATTAGCACAAGGGCTTGATAACGTCTCTCTTATGGATCAAGATCATCTTGGTTTTCCACCTGGGATAGGAAAAACAGAAGATAATAGAACTCATCATATTATGCCGCTAACAACTGATGGAGATCCCCTACATCATGAAGATTCCCATCTCAAATTTAATGAAGAAAATCCTGAGGACTTACATGTAAGGATTGAAACTGAAACTACCATTCTGAAGTCTAATTATAATCAATCCCAGCTTAAGGAAAATGAGAGTATGCAGTTTGATGCTATGATGGAAAATCTAAGAATGCAAGGGTCAGAGTTTGAGGATGGCAAATTTGATGTGAAAAATAGCAACCTATCTCCAGCCCTTGATCCTTCTTTTGGAGATATTGACATTAGTACTGTGCAGGCTTGCTTCTTAGTTACTTCTTTATTACCATTGTTACATAATTTTGATTTGGATTCTTCAGATTTCAGAAGTGTATTGGTCATTAAGAATGAAGATCTTGAGGAGCTGCGAGAATTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACGGGCCGGTCATCTGAACAAGAGAGATTGACTGTGGAGTTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGACCAGGTGGTACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCTGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGCGAAATACTTTGGTTACTGGTGGTGTGCGTGGGACACTACCTTGGATGGCACCAGAGCTTTTGAATGGCAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATTGTATTATGGGAAATTCTTACCGGTGAGGAGCCGTATGCCAATATGCATTATGGTGCAATTATAGGTGGAATTGTAAATAACACATTAAGGCCAACCATCCCAAGTAACTGTGATCCTGAATGGAGAACACTGATGGAACAATGCTGGGCTCCCAATCCTGCAGTCAGACCATCCTTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCAGCAGCAAGCCAAACCAAAACACATGGCCATAAAACATCTAAATGA 3882 0.4031 MGVLLLSWKFQFVKCLYVVQVLLESRFYKHLQCNTMEPRNEEFQSGSQSVIQDHMDGVHSIRRPSEYSTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPMFSNVSDSNSNYATGCMELKGVLGINHTASESGSDISILSKTEKGLTEFNRPSTSLHGDRSNYGSIRSIPRVSLNQENSRFVRGYGSSVGSDSSSMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSKKLRLFLFSMSDLEDAHFSLSSISDDSEVQYVVAVNGMDFGSINSSTPLGVSFSADDLHELERQTSQRETNNRAAVESVGASAPLTNKSDPSLPIHSSQAVLPNASNSYELDQLSYGDQMPQFGDYSRQYFVHHGLNSTHNPVGETFIPMAPHLLNNQQGVQNEDHVSSGLQIQNSQLSATQVKKISDNSVKQGSDSENVLTSETTSPAPLQTSDSGLKSNFPEASVVVTMPEGHPPSLPSTKKVQHKDYEELSSTSSSAFVPAYVVSHPNAIDLSCLHPPPLPERVYFSERTPREQVELLNRSSKSDDTHSSQLHVSDLLSDVNPEDPVTESGGNLHPTDELGNAEKPLHADGHTTDNGFSKNQMSKPLPDTNSLIKSKLSELTDPELKPVLSSNEGTKDVETENYRKDSQIKPLLDETETKTKTKDGKSDLPTLHHVSSAKRLDDLASNLPEIDWGEASGKESNDGCLVEELPVSVTGSVTKDVNQDFPQNVVSKQSQGDILIDIDDRFPRELLSDMFSKAIHGEDPSSLHPLSGDGVSLSVNMENHEPKRWSYFHKLAQGLDNVSLMDQDHLGFPPGIGKTEDNRTHHIMPLTTDGDPLHHEDSHLKFNEENPEDLHVRIETETTILKSNYNQSQLKENESMQFDAMMENLRMQGSEFEDGKFDVKNSNLSPALDPSFGDIDISTVQACFLVTSLLPLLHNFDLDSSDFRSVLVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSAAASQTKTHGHKTSK 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00934 1293 CDD STKc_MAP3K-like 1017 1274 - -
Vimu5g00934 1293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1136 1148 IPR008271 GO:0004672|GO:0006468
Vimu5g00934 1293 Pfam Protein tyrosine and serine/threonine kinase 1012 1274 IPR001245 GO:0004672|GO:0006468
Vimu5g00934 1293 ProSitePatterns Protein kinases ATP-binding region signature. 1017 1042 IPR017441 GO:0005524
Vimu5g00934 1293 Gene3D Phosphorylase Kinase; domain 1 1004 1098 - -
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 645 662 - -
Vimu5g00934 1293 Pfam PB1 domain 213 296 IPR000270 GO:0005515
Vimu5g00934 1293 SUPERFAMILY CAD & PB1 domains 212 300 - -
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 675 723 - -
Vimu5g00934 1293 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 216 298 - -
Vimu5g00934 1293 SMART PB1_new 211 298 IPR000270 GO:0005515
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 689 723 - -
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 356 385 - -
Vimu5g00934 1293 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1004 1098 - -
Vimu5g00934 1293 SUPERFAMILY Protein kinase-like (PK-like) 998 1274 IPR011009 -
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 587 601 - -
Vimu5g00934 1293 CDD PB1_UP2 200 296 - -
Vimu5g00934 1293 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1099 1291 - -
Vimu5g00934 1293 ProSiteProfiles Protein kinase domain profile. 1011 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 587 662 - -
Vimu5g00934 1293 Gene3D - 215 298 - -
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 351 385 - -
Vimu5g00934 1293 PRINTS Tyrosine kinase catalytic domain signature 1245 1267 IPR001245 GO:0004672|GO:0006468
Vimu5g00934 1293 PRINTS Tyrosine kinase catalytic domain signature 1201 1223 IPR001245 GO:0004672|GO:0006468
Vimu5g00934 1293 PRINTS Tyrosine kinase catalytic domain signature 1130 1148 IPR001245 GO:0004672|GO:0006468
Vimu5g00934 1293 PRINTS Tyrosine kinase catalytic domain signature 1093 1106 IPR001245 GO:0004672|GO:0006468
Vimu5g00934 1293 PANTHER SERINE-THREONINE PROTEIN KINASE 241 1275 - -
Vimu5g00934 1293 SMART serkin_6 1011 1277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00934 1293 MobiDBLite consensus disorder prediction 472 508 - -
Vimu5g00934 1293 Gene3D Transferase(Phosphotransferase) domain 1 1099 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00934 Vimu-Chr5 13361670 13375416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00934 70 626 MAP Kinase Kinase Kinase AT1G16270 36.767 2.45e-84 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu5g00934 PK_Tyr_Ser-Thr 3.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00934 - - gmx:100817937 2071.97