Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00912 ATGTCAGACACAGGGTGTCGTATGCGTGTTCGTGTCGCAAACCCTTCTGAAGCAGGGACGCACAACAGGGAAGTGCAGAATGGAGCGGTAGCAGCTGTCATCTTTACCGAAGATTTGAAAAAATTGTATGTGACAATGAAAGAAGGTTTTCCATTGGAATTTGTCGTTGATATCCCTCTTGATCCTCATCTGTTTGAGATTATTACGAGTTCTGGAGCTGAAGTAGATCTCCTTCAGAAGCGTCAGATCCATTATTTCATGAAGGTTGTGATTGCTTTAGTACCTGGAATACTGATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTACATATCACTTCCAAGAGGTTTCTTTACAAGAAGTATAATCAACTCATTGATATGGCCCGAGCAGAAAATTTCATTTTGCCAGTTGGAGACGTTGGTGAAACAAAGTCAATGTACAAGGAAGTTGTGTTGGGGGGTGACGTTTGGGATCTTCTTGATGAGTTAATGATCTATATGGGAAATCCTATGCAATTCTATGAAAGGGGTGTGCAGTTTGTTCGGGGTGTTCTACTTTCTGGACCTCCAGGAACTGGAAAAACATTGTTTGCCAGGACACTTGCAAAAGAAAGTGGATTACCTTTTGTATTTGCTTCGGGTGCTGAGTTCACTGATAGTGAAAGAAGTGGTGCATCTAGGATAAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTAGATGAAATAGATGCTATTGCTGGAAGACATGCTAGGAAGGATCCTCGGAGAAGAGCAACTTTTGAGGCTCTTATTGCGCAGCTTGATGGGGAGAAGGAAAAAACTGGAGTTGACCGTGTATCTCTCAGACAAGCTATCATATTCATCTGTGCTACAAATAGGCCAGATGAATTAGATCCTGAGTTTGTTCGTCCTGGCCGTATTGATCGTCGACTGTACATTGGTTTGCCTGATGCAAAGCAGAGAATCCAGATTTTTGGTGTGCACAGTTCTGGAAAGCAATTGTCCGAGGATGTGAATTTTGAAGAGAATGTGAGACTCTTCATCTTCTTTGGGCTAAATGTGGTTGCTCTCTCTGTATCTCAACAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAACCTTGTTAATGAATCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGATATTATTGATGTATTGGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTGACAGAGGAAGAGCAACAAAAATGTGAACAAAGGCTCCTGCCTGGGGGCAAGGAAACTGCAATATCCGTATTCTATCCTCGAGAAGATATGGTAGACCAAGGTTATACAACATTTGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTATTGTATTTGGTGATGATATAAGTGATGGAGGAAGCGATGATCTTGAAAAGATAACAAAGATTGCTAGGGAGATGGTTATCAGCCCTCAAAATAAGAAGTTGGGGTTAATTGGTTTAACAAAAAGGGTTGGTTTAATTGATCGACCAGACAGCCCAGATGGAGAGTTGATAAGATATAGATGGGATGACCCTCATGTAATTCCTGCTGACATGACGCTAGAGGTGTCTGAGCTTTTTACAAGGGAGTTGACTAGGTACATTGAAGAAACTGAAGAACTTGCAATGAATGCTTTAAGGAATAATAGGCACATTTTGGACTTGATTGCAAAGGAACTACTGGAGAGGTCAAGGGTAACTGGATTGGTATGCTATGCTCCTATTTCTGTTGTCATTTTCGTTTTACCTTTTTCATTGGAGAGGGAAGTGGTTAAAGTATAA 1872 0.4135 MSDTGCRMRVRVANPSEAGTHNREVQNGAVAAVIFTEDLKKLYVTMKEGFPLEFVVDIPLDPHLFEIITSSGAEVDLLQKRQIHYFMKVVIALVPGILILWLIRESVMLLHITSKRFLYKKYNQLIDMARAENFILPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSERSGASRINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRVSLRQAIIFICATNRPDELDPEFVRPGRIDRRLYIGLPDAKQRIQIFGVHSSGKQLSEDVNFEENVRLFIFFGLNVVALSVSQQLVFRTVGFSGADIRNLVNESAIMSVRKGHSKIFQQDIIDVLDKQLLEGMGVLLTEEEQQKCEQRLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERIVFGDDISDGGSDDLEKITKIAREMVISPQNKKLGLIGLTKRVGLIDRPDSPDGELIRYRWDDPHVIPADMTLEVSELFTRELTRYIEETEELAMNALRNNRHILDLIAKELLERSRVTGLVCYAPISVVIFVLPFSLEREVVKV 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00912 623 SMART AAA_5 181 324 IPR003593 GO:0016887
Vimu5g00912 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 412 IPR027417 -
Vimu5g00912 623 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 138 323 - -
Vimu5g00912 623 SUPERFAMILY FtsH protease domain-like 435 598 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vimu5g00912 623 FunFam Uncharacterized protein 467 601 - -
Vimu5g00912 623 PANTHER ATP-DEPENDENT PROTEASE 435 597 - -
Vimu5g00912 623 Pfam ATPase family associated with various cellular activities (AAA) 185 321 IPR003959 GO:0005524|GO:0016887
Vimu5g00912 623 Gene3D Peptidase M41 419 605 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vimu5g00912 623 Pfam AAA+ lid domain 369 405 IPR041569 -
Vimu5g00912 623 Gene3D - 324 415 - -
Vimu5g00912 623 Pfam Peptidase family M41 433 594 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vimu5g00912 623 Gene3D - 142 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00912 Vimu-Chr5 12687542 12696576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00912 148 598 Miscellaneous Gene Families AT5G53170 27.521 4.85e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00912 K03798 - gmx:100819005 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00912 5 12687542 12696576 Vimu5g00912 5 12687542 12696576 ECH