Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00897 ATGCTGGATGATATAACATTCAAGGACCCTTTGAACACATTTACTGGTATTGAGAAGTACAAATTGATCTTCTGGGCATTGAGGTTTCATGGTAAAATTTTGTTCCGTGAGATTGCTCTGGATGTGTATAGGATATGGCAACCTTCAGAGAATGTGATATTGATTAGGTGGAACCTAAGGGGTGTGCCTCGGGTTCCATGGGAGGCTAAAGGGGAGTTTCAAGGCACATCAAGGTACAAATTGGACAGAAATGGGAAAATTTATGAACACAAAGTTGATAATTTAGCATTCAATTTTCCACAGACCCTCAAACCAGTTTCAGTTTTGGATTTGGTCACTGCCTGCCCTGCAAGTCCAAATCTAACATTTTCTTGGGGTTCTGTGGATTCCAACTCTTCTTCATGGATAGAGTTTTATCAAGCTGTTAAGGACACATTGGATCAAGAAGAGGGGTTGCTGCCACAAGATTGTGTGGCTACATGTTCATGGTGA 492 0.4126 MLDDITFKDPLNTFTGIEKYKLIFWALRFHGKILFREIALDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQTLKPVSVLDLVTACPASPNLTFSWGSVDSNSSSWIEFYQAVKDTLDQEEGLLPQDCVATCSW 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00897 163 SUPERFAMILY NTF2-like 3 91 IPR032710 -
Vimu5g00897 163 PANTHER RIKEN CDNA 2310061I04 GENE 3 128 IPR018790 -
Vimu5g00897 163 Pfam Uncharacterized conserved protein (DUF2358) 3 90 IPR018790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00897 Vimu-Chr5 12201452 12202185 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00897 - - gmx:100797159 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00897 5 12201452 12202185 Vimu5g00897 5 12201452 12202185 ECH
Vimu4g01608 4 17227484 17227951 Vimu5g00897 5 12201452 12202185 PCT