Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00889 ATGAGGGTTCAGAAAAACCTTCAGCTGAGGATTGAGGCACAAGGAAAATACATGCAAAGTATATTGGAGAAGGCTTATCATACACTTGCTCGTGAAAACATGGGCACAGGCATGAAGGGTATGGTATCAGCAGGTCAAGGAAGCAGTGAGATGGGTGTGATGAAAGAATTTTGTTCTCTGAATTACCCTTCTTTTCAAGATCTGAACTTGTACGGTGGTGGTGGTGAACAACTTGAAGGGTTTATGGCATCAAACAGTGAGAGTGTGTTTGAGGGAAAGAAGAGAGTTTGCCCCTACAGTGGAAGTGGGAAGAGTCCATTGATATGGAATGATGATCTCAGGCTTCAAGATTTGGGAACAGCTTCATCATGCATTAGCCCTGAAGAGGACCCTTTCAAAGGGGATCACAAGGTTCAGATTTCACCACCATCAATGGATAGTGACCCCATGTCAGAGATCTATGACACAAAGCCTTTGGTGCTGCATGGAGAAAGTGTTACCACTCACAAGAAATTTGAAGCTTCTATGAAGCTAGAAAGGCCATCACCACAAAGATCACCCCTTCAACCAGAAAGGAATAGTCCTATGATCAATGCTACTTCCATGGCACAAGGTACAATTAATTTTCTTTTGGATCATAATCATAATTATTAA 654 0.422 MRVQKNLQLRIEAQGKYMQSILEKAYHTLARENMGTGMKGMVSAGQGSSEMGVMKEFCSLNYPSFQDLNLYGGGGEQLEGFMASNSESVFEGKKRVCPYSGSGKSPLIWNDDLRLQDLGTASSCISPEEDPFKGDHKVQISPPSMDSDPMSEIYDTKPLVLHGESVTTHKKFEASMKLERPSPQRSPLQPERNSPMINATSMAQGTINFLLDHNHNY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00889 217 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 81 IPR044848 GO:0003700
Vimu5g00889 217 MobiDBLite consensus disorder prediction 172 193 - -
Vimu5g00889 217 Pfam MYB-CC type transfactor, LHEQLE motif 2 27 IPR025756 -
Vimu5g00889 217 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00889 Vimu-Chr5 11999265 12000964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00889 1 198 G2-like Transcription Factor Family AT1G79430 38.938 3.59e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00889 - - gmx:100796268 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00889 5 11999265 12000964 Vimu5g00889 5 11999265 12000964 ECH
Vimu4g01587 4 17051429 17053368 Vimu5g00889 5 11999265 12000964 PCT