Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00868 ATGCCAAAGTTTGAAGGTGAAGATCAAGAGATGAGAAAAGCACCAAAGGGGCAATTCGTTGTTTACGTGGGGGAACAACTTACAAGATTTACCCTACCACTCTCTTGCTTGAAGAACCCTATTTTTCAGCAGCTGCTCAAGAAATCTGCAGAGGAATACGGATACAGTAACTCAAGAGGCATAGTTCTTCCGGCATTTGTGGAAAAGGTTTTTCTGGAATACAAACGGTTTGCGCCTAAGAAAGTTTCTCTCTCCACGAAATCATCTCTCTCTGTCGACACCAAACCCAAACTCTCCGACATCGATTCTGAACTCTGCCGACGCCATCGAAGACGTGTATCTTCATCTCTGACGTGTATCTTCATCTTTGGCGAACATTGTAATTTTTTCTCCAAAGGAGAGGTTTTTTGGCTGTCGCCGTTCTTACTTGGTGGGCCAACGAAATCGTTTGTGTCAGTAATAGTGTCGCTGAAGGAAGGAAGTTTGGATAGGGACCAGTCTTTTAACAATAATATCGAAAGGTACTTATATTTTCGCATGTTGTCAGTAGTAGAATGGTTGAGTGATTGTTATGTTGTTACAGTCGTTAATTGGCAATGTCGAGGTTGGGTGAAATCATCGTATGTTGTGGACATGAATTCTTTGCTACAATCCAGGCACGAGAGGCGCATACAGCAAACTCCTTTTAAATGGTTTTTAGAGATTGTAGATCCGATAGAGCTGAACATGAAAATGATGAAACAGTTGGTTTGTCGATGGGTTCCGCCCCATCAATCATTTAAAGTTAGGCAAGAAATGGTTCCTTTTAATGTTTTGGACGTGGTGATGACTTTAGGGTTAGGTGTAGGTGGGTTGGAGGTTCCTTTTGATCAAACAGTTGTAGGTAAAGTTGGTGAGTTGTTTAATTCCAACACAATCACATTGAAAGACATGATAACCATTTTTAATAACATTGTTGTTAATGAAGATGTCGATGTAGATGTCATTGAAGATTCTCTAAGCATTAGTGGGGCTGCTGCTGTTTTGCAGCTTTGGGTGTATGAACGGCTGAGTTTGCATGGTAATATTTCTCGAAAGGTATTTCCACGGATTCTGCGATTTCGTTCATTAGATTATGGCACGGCAGAAATAGAAGTTTTGTTCCAGAAAGGAGAGGTACAATTTGATTGGTACCTTTCATCGAGTGATCATCAAAATCCTATCATTTGTGCTGCATTGTATATGGGTGCTGTGGGAACCATTGACGAAGCACCTCAAAAAGGTGATGGTAGTTATGAATCTGCACTTGCTTCAAGAGTGGAGAAAATAAAAAGAAACAACCAAAGAATGAGAAACCTAAAAGATGAAATAGCTGCTTTAAGGAAGGAACTTAGTCATCAAAGAAAGATGAGAAAATTTGAGCAATATCCTTCCGTTCATGTTGTTGGTCAGGGGAATGAAGAAGCAACTGCAGGTGCCGCACATGAAGCAACAGCACATGTAGAAGCTGCAGCTGAACAAGGTGCACATGAAGAAGCTTTACCTGAAGGAAGTGGACATGCAACACCTTTTTATGATAAAGATGCGGATGAAGAAGTTGGTGATGAAGAATCCGCAGAGCAGCCAAGAACTTTCATCGACATTGGTGAGGATGAGGAGGCAGAAGTAAATGTTGCTGTTGAACCGATGGTTGTAGAGCCGTTGTATACCTTTGTAGGTGATCCAAGAGAAACAGTTGATGTGTTTATGTTGTACTTCCTTGCGACGCGCAAAGGCATTGTACAGAGGTAA 1770 0.413 MPKFEGEDQEMRKAPKGQFVVYVGEQLTRFTLPLSCLKNPIFQQLLKKSAEEYGYSNSRGIVLPAFVEKVFLEYKRFAPKKVSLSTKSSLSVDTKPKLSDIDSELCRRHRRRVSSSLTCIFIFGEHCNFFSKGEVFWLSPFLLGGPTKSFVSVIVSLKEGSLDRDQSFNNNIERYLYFRMLSVVEWLSDCYVVTVVNWQCRGWVKSSYVVDMNSLLQSRHERRIQQTPFKWFLEIVDPIELNMKMMKQLVCRWVPPHQSFKVRQEMVPFNVLDVVMTLGLGVGGLEVPFDQTVVGKVGELFNSNTITLKDMITIFNNIVVNEDVDVDVIEDSLSISGAAAVLQLWVYERLSLHGNISRKVFPRILRFRSLDYGTAEIEVLFQKGEVQFDWYLSSSDHQNPIICAALYMGAVGTIDEAPQKGDGSYESALASRVEKIKRNNQRMRNLKDEIAALRKELSHQRKMRKFEQYPSVHVVGQGNEEATAGAAHEATAHVEAAAEQGAHEEALPEGSGHATPFYDKDADEEVGDEESAEQPRTFIDIGEDEEAEVNVAVEPMVVEPLYTFVGDPRETVDVFMLYFLATRKGIVQR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00868 589 Pfam Auxin responsive protein 12 70 IPR003676 GO:0009733
Vimu5g00868 589 MobiDBLite consensus disorder prediction 498 542 - -
Vimu5g00868 589 Coils Coil 429 463 - -
Vimu5g00868 589 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 13 65 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00868 Vimu-Chr5 11424578 11428945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00868 15 68 Calmodulin-binding Proteins AT3G43120 44.444 3.16e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00868 K14488 - vra:106773382 365.925