Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00865 ATGGCAGTTGTTGTTCGCATTCAGGATGAATTTTTCTCCTTTGTGAAGGGTGCTCCAGAAGTTATACAAGACAGACTCATTGAGGTACCACCATCATATGTTGAGACCTACAAAATGTACACACGTCAAGGGTCTCGTGTTCTTGCTCTGGCCTACAAGTCCCTTGCTGACATGACAGTCAGTGAAGCTAGAAGCATGGATAGGGATACCGTGGAGAGTGGATTAACATTTGCGGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCAACTGTTTTATCTGAATTAAAAGAATCTTCACATGACTTGGTGATGATTACCGGTGACCAAGCTTTGACAGCTTGTCATGTTGCTAGCCAAGTTCATATTATATCAAAGCCTACATTAATCCTTGGATCAGCACGAAATGGTGAGGGATATAATTGGATGTCGCCTGATGAGACTGAAAACATTCGCTACAGTGAGAAAGAGGTTGAATCTTTATCAGAGACCCATGATCTCTGTGTTGGTGGTGATTGTATCGAGATGTTACAACAGACATCAGCTCATCTTGTGGTCATTCCTCATGTGAAGGTTTTTGCCAGGGTTGCTCCCGAACAAAAAGAACTTATCATGACCACTTTCAAAACAGTTGGACGGTTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGGGCTTTGAAGCAGGCCCATGTAGGAATCGCTCTTCTAAATGCAATTCCTCCAACTCAAAGTGGAAACTCTTCTTCAGATTCGTCTAAAGAAGAAGGTTCAAAATCTGCTAAGCAAAAGAAATCTAAGTCTGCACTGGACACATCTGGAAAAAGTGCAGGTGAAGGCACTTCCAAAGGAAAAGTTGCTTCAAAATCAGATTCCAGTAGCCACTCTTCTGGTAACCGTCATCAAGCAGCTGTTGAGATGCAACGACAGAAGCTTAAGAAGATGATTGACGAGCTTAATGAGGAAGGAGATGGTCGTGCACCGATTGTGAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCTACCACTGACATAATTCGCCAAGGTCGGAGTACTCTAGTTACTACCCTCCAGATGTTCAAAATTCTGGGTCTCAATTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTGAAGCTAGGTGACGTACAAGCTACAATAAGTGGAGTATTCACTGCTGCATTTTTCCTCTTCATCTCACATGCACGTCCTCTTCCAAGTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCTCTTTTGGGGCAATTTTCTATTCACCTGCTTTTCCTGATTTCATCAGTGAAAGAAGCTGAAAAATACATGCCAGATGAATGCATTGAACCTGATGCAGATTTTCATCCTAACCTGGTGAATACTGTTTCGTATATGGTGAGCATGATGCTTCAGGTGGCGACATTCGCTGTGAACTATATGGGCCATCCGTTCAACCAGAGTATTTCTGAAAACAGACCGTTCCGGTATGCACTTGTGGCTGCTGTTATTTTCTTTACCGTGATTACATCAGATCTGTTCAGGGAGTTGAATGACTGGTTGAAGTTAGTGCCATTGCCAGTGGGATTAAGGGATAAACTATTGATATGGGCGTTTCTAATGTTTTTGGTTTGTTATTCGTGGGAGAGGCTATTGAGATGGGCCTTCCCTGGTAAGATCCCGGCTTGGAAGCGGCGACAACGGCTTGCTGTATCTAATTTAGATAAGAAGAAACAGGTCTAA 1803 0.4304 MAVVVRIQDEFFSFVKGAPEVIQDRLIEVPPSYVETYKMYTRQGSRVLALAYKSLADMTVSEARSMDRDTVESGLTFAGFVVFNCPIRSDSATVLSELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGSARNGEGYNWMSPDETENIRYSEKEVESLSETHDLCVGGDCIEMLQQTSAHLVVIPHVKVFARVAPEQKELIMTTFKTVGRLTLMCGDGTNDVGALKQAHVGIALLNAIPPTQSGNSSSDSSKEEGSKSAKQKKSKSALDTSGKSAGEGTSKGKVASKSDSSSHSSGNRHQAAVEMQRQKLKKMIDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPSLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVIFFTVITSDLFRELNDWLKLVPLPVGLRDKLLIWAFLMFLVCYSWERLLRWAFPGKIPAWKRRQRLAVSNLDKKKQV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00865 600 Gene3D - 80 256 IPR023214 -
Vimu5g00865 600 NCBIfam HAD-IC family P-type ATPase 191 239 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g00865 600 MobiDBLite consensus disorder prediction 258 272 - -
Vimu5g00865 600 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 89 IPR023299 GO:0000166
Vimu5g00865 600 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 576 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Vimu5g00865 600 MobiDBLite consensus disorder prediction 243 310 - -
Vimu5g00865 600 Gene3D - 1 79 IPR023299 GO:0000166
Vimu5g00865 600 PRINTS P-type cation-transporting ATPase superfamily signature 101 111 - -
Vimu5g00865 600 PRINTS P-type cation-transporting ATPase superfamily signature 220 239 - -
Vimu5g00865 600 MobiDBLite consensus disorder prediction 273 307 - -
Vimu5g00865 600 FunFam Cation-transporting ATPase 80 255 - -
Vimu5g00865 600 SUPERFAMILY HAD-like 71 244 IPR036412 -
Vimu5g00865 600 ProSitePatterns Hypothetical cof family signature 2. 220 242 - -
Vimu5g00865 600 SUPERFAMILY Calcium ATPase, transmembrane domain M 361 577 IPR023298 -
Vimu5g00865 600 Coils Coil 305 325 - -
Vimu5g00865 600 MobiDBLite consensus disorder prediction 243 257 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00865 1 600 Primary Pumps ATPases AT5G23630 74.959 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00865 K14950 - gmx:100789385 1078.93