Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00859 ATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGTTTTATATGAAAGAATCTATCATCAATATGATTTTCACTGTTTTATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCATTAGGTGTACAAAAACAGTTAATTTCTCAGTCTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACATGTTTGATGTGGTCTAGGCTGCACAATGTTAGGGCACTTGTAGTTCTGGACAACGTTGATGAAGTTGAACAACTAAGGATGTTTACAGGGAACAGAGACACTTTGTTGCTTGAATACTTAAGTGGAGGGAGCATAATCATCGTAATTTCTAGGGATGAACATATATTGAGGACGTATGGAGTAGATGACATTTACCAAGTCCAGCCGTTGAATAAAGATAATGCTATGCAATTGTTTTGTAGAAATGCATTCAAAGTTACTTATATTTTGAGTGGGTATGAAAAGTTGGCTCGAGATATACTATCTCATGCTCAGGGCCATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTCTCACAATGGGAAAGTGCATTGGCCAGGCTAGAAGAAAATACAAGTAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGAAAGAGACAAAGAAATATTTTTGGATATTGCATGTGCTCTATGCTTTCATGATGAGAAATATTTCAAGGAAGTTCTACACTTTCGTGGATTTCATCCTGAATATGGTCTACAAGTTCTGTTTGACAAATCACTAATAAAAAAAGAGGATGGGCTTATTTATGTGCATAACTTGTTGAAGGACTTGGGCAGGTGTATTGTCAAAGAAGAATCACCTAAGGAACCCCTGAAGAGGAGTAGGTTGTGCAATTACCAAGATTTCTGCAAAGCTATGTCAAAGAATCAGACAACTGAAATTCTTGAAGTTATAGCTGTTAATTCAGAAGCTTCAAAAACTACGAGGGTTGATGGTCTATCGAAAATTAGACACCTTAAGTTGCTTAAATTTTGGAACGCTCTACCTAATTTGAAACGGTTGGATCTCTCTTACTCAGAAAAATTAGTTGAGATGCCAGATTTTGCATTGGCCCTAAATCTTGAAGAGATATTTCTTAAAGGATGCATATGCAGCTCCGAAAACTCAGTCCATCGATTGGTCTTCTCACGAAGCTTACTACTTTGA 1215 0.3638 MGGIGKTTLARVLYERIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQSLNEKNLEISNSFEGTCLMWSRLHNVRALVVLDNVDEVEQLRMFTGNRDTLLLEYLSGGSIIIVISRDEHILRTYGVDDIYQVQPLNKDNAMQLFCRNAFKVTYILSGYEKLARDILSHAQGHPLAIEVIGSSLFGRNVSQWESALARLEENTSKNIMDVLRISFDQLDERDKEIFLDIACALCFHDEKYFKEVLHFRGFHPEYGLQVLFDKSLIKKEDGLIYVHNLLKDLGRCIVKEESPKEPLKRSRLCNYQDFCKAMSKNQTTEILEVIAVNSEASKTTRVDGLSKIRHLKLLKFWNALPNLKRLDLSYSEKLVEMPDFALALNLEEIFLKGCICSSENSVHRLVFSRSLLL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00859 404 Gene3D - 134 218 IPR042197 -
Vimu5g00859 404 PRINTS Disease resistance protein signature 169 183 - -
Vimu5g00859 404 PRINTS Disease resistance protein signature 71 85 - -
Vimu5g00859 404 PRINTS Disease resistance protein signature 349 365 - -
Vimu5g00859 404 SUPERFAMILY "Winged helix" DNA-binding domain 205 307 IPR036390 -
Vimu5g00859 404 Gene3D - 1 127 IPR027417 -
Vimu5g00859 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 228 IPR027417 -
Vimu5g00859 404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 393 IPR044974 GO:0006952
Vimu5g00859 404 Pfam NB-ARC domain 1 206 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00859 Vimu-Chr5 11281037 11282604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00859 1 299 WRKY Transcription Factor Family AT5G45050 35.000 9.44e-47 170