Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00853 ATGGTTAAGGGAAAGAATGAAGAGATGTCTACATCCGAGTTATCTGCAATTTTGAGGGTTTATGGACACAATTTTGAGGCCTTCCTTGCTATTGTTAATCTTAGAAAGGAAGTACCTGAACAAGGGGCACAAGAAAATGCTATATCCAAGGACTTCAACTCTCTTTGTAAAGATGCTAGAGCAAAAAGTTATATACATGAAGAGCTCTCAAAGATTGCAAAGGAAAAGGCAAGATGTGATAAATTTGTCAAGACAATTGTTAGGAAGGAAGAAATTGAAATTAACACTGTTTTAGGTTTTGTGAGAGGAACTGAGATAACAATTTTGAGCAGTTGTGGTCTGGGGTGTGTTAGGAGTGTTGAGACAGTGCATATTGGTCAATTGGAACTTGAATTCTGTGGTGATAGTAATCCCATAGGCAGTCTATCAAATAGGAAGCATTTTAGGTGGTTTGAAGGGAATTGGGAGGTTGATTTTGAGCATTTGGGTTGTGGGATGCTTTTGAGAATCTCTCAATCGAAGCTACCTTTTTGCAATCCCAATGGCGTCCTCTCTCATTGCAAAGGCTTCTTCTCCTCTTCTCTCCTCTCCAAGTCTATCATTCGTCCCGCCGCTTTAGCCTCTCGCTCTTTCAACACCAACGCTATGCGCAACTACGACGATTGGAACGACGACGTTGAACGTCGCTCAGAATTCTCTTCACCTTGTACCGTGCGTCGTGATGATATCTTCTCAAACGTTTTGAGCCAGGTTTTGAACATGATGGATCAGTTCATGGACAATCCGTTCCTCTTTGTGCCTCACAATATCGGAGCCGGAGCCAGAGTTCATTGCGGATGGAACGTGAGAGAGACAGAAGATGCTCTGCTTCTCCGCATGGACATGCCTAGACTTGGCAAAGAAGAAGAGATCTGTGACATGCTTTTCTGCGGGATTTTTGACGGGCACAGGCCATGGGGTCACTTTGTGGCCAAGAAGAGAGAGACACTTTCCCAAACTTCACTTGATCCAGATGTTGATGTTGATATAACGGTAGGGAAAAAGCAACACCAGTTCAATATATGGAAGCACTCTTACTTGAAGACCTGTGCTGCCATTGATCGAGAACTAAAGCAGAATCGCAAGATAGATTCATTTTACAGCGGAACAACTGCCTCCACAACATCAGATGATGGAAGTTTGGTAGCAGTTCAGTTGACAGTAGATTTCAAGCCCGGTTTACCTCTTCCTAATTGGGTATTCATCACCAATGTCATTTCGGCTGCATTTTATTTCATTCCTAGCGTGAGGCCTCCATGGTTTCGTCAACGCCTTGCAGAATTTTCTTTGGGGGAAGAAAAGTTGCAACTGTACAAAATTCTTCTTCTCTTTCTCTGTGATCGTGTTTGCAGTGCGGTGGTTGAAGGATATACTGGTAGCAGTAAAATAAAAGCTGCTAATTATTGGGCACACTTGCAGAATTCAGAATTCAACAGCACCGCCTGA 1485 0.4303 MVKGKNEEMSTSELSAILRVYGHNFEAFLAIVNLRKEVPEQGAQENAISKDFNSLCKDARAKSYIHEELSKIAKEKARCDKFVKTIVRKEEIEINTVLGFVRGTEITILSSCGLGCVRSVETVHIGQLELEFCGDSNPIGSLSNRKHFRWFEGNWEVDFEHLGCGMLLRISQSKLPFCNPNGVLSHCKGFFSSSLLSKSIIRPAALASRSFNTNAMRNYDDWNDDVERRSEFSSPCTVRRDDIFSNVLSQVLNMMDQFMDNPFLFVPHNIGAGARVHCGWNVRETEDALLLRMDMPRLGKEEEICDMLFCGIFDGHRPWGHFVAKKRETLSQTSLDPDVDVDITVGKKQHQFNIWKHSYLKTCAAIDRELKQNRKIDSFYSGTTASTTSDDGSLVAVQLTVDFKPGLPLPNWVFITNVISAAFYFIPSVRPPWFRQRLAEFSLGEEKLQLYKILLLFLCDRVCSAVVEGYTGSSKIKAANYWAHLQNSEFNSTA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00853 494 SUPERFAMILY PP2C-like 266 410 IPR036457 -
Vimu5g00853 494 Gene3D - 266 409 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00853 Vimu-Chr5 11069124 11077443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00853 306 408 PP2C-type Phosphatase Gene Family AT5G27930 48.551 2.83e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00853 - - gmx:100794039 154.451