Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00847 ATGCAGATTATCGAGATGAATCAGGCTTATGCAAATTCTTCAAATGATTTAGAAAGCCATGTCCACAAAGAAAATCAATATACTACTAATCATGCTTCCATGAGTGGCTACAAAACCAATCGAGCAAGAGAAATAGAACAAGTTTTCTCTGAACATAATGCAAAGGTGACAAGTAAACCAACATCTAAACCTCATCACGATCATAACAATATTTCTGAGTTTTCCACTACTCAGCACCCAACTCCAAGTGCAAGAATGTCTTCAAATGACAACCCTTCAACAAAATCACCAAGAGCAATAGCAGAAGCTGCAAGAAATTTTCCTATTTCTACAAAAAACATCATTCTAGGTGACCATAGAAGTGGCAGTAGCTCTCGTAGTAACAGTTTGGAGAGCATTTGCAGTGCACATATTAAGCCTCATACTGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAAGGGTAATGGTCTTGATCTCAGTCATTTCAAGCTTCTAAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTAGAACTTAAAGGAACCAAAGCATTCTTTGCCATGAAAGTAATGGATAAGGCAGCACTTGCTAGTAGAAACAAGCTTTTGAGGGCAAAAACAGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTTCTTCCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTCTGGTCATGGAGTTTTGTAGCAGTGGTAGTTTGCATTCTCTTCGAATGAAACAACCTAACAAGCATTTCACTGAAGAAGCTACACGGTTAGTTGCTTAA 816 0.3787 MQIIEMNQAYANSSNDLESHVHKENQYTTNHASMSGYKTNRAREIEQVFSEHNAKVTSKPTSKPHHDHNNISEFSTTQHPTPSARMSSNDNPSTKSPRAIAEAARNFPISTKNIILGDHRSGSSSRSNSLESICSAHIKPHTGGDVRWDAINMVSKGNGLDLSHFKLLKRVGYGDIGSVYLVELKGTKAFFAMKVMDKAALASRNKLLRAKTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCSSGSLHSLRMKQPNKHFTEEATRLVA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00847 271 PANTHER FLIPPASE KINASE 1-RELATED 30 268 - -
Vimu5g00847 271 MobiDBLite consensus disorder prediction 55 97 - -
Vimu5g00847 271 FunFam Serine/threonine-protein kinase D6PK-like 163 248 - -
Vimu5g00847 271 ProSiteProfiles Protein kinase domain profile. 165 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00847 271 MobiDBLite consensus disorder prediction 73 96 - -
Vimu5g00847 271 MobiDBLite consensus disorder prediction 58 72 - -
Vimu5g00847 271 SUPERFAMILY Protein kinase-like (PK-like) 158 269 IPR011009 -
Vimu5g00847 271 Pfam Protein kinase domain 166 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00847 271 Gene3D Phosphorylase Kinase; domain 1 159 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00847 Vimu-Chr5 10970604 10971419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00847 65 271 AGC Kinase Gene Family AT3G12690 58.654 2.93e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu5g00847 Pkinase 4.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00847 - - gmx:100802478 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00847 5 10970604 10971419 Vimu5g00847 5 10970604 10971419 ECH
Vimu4g01543 4 16307497 16309558 Vimu5g00847 5 10970604 10971419 PCT