Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00846 ATGTCTTATTGCTACAGGTTTTATTGTTCAGAAATTTTGTTAGCCTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATAAAGGTCACATAATGTTATCAGATTTTGACCTATCTCTTCGGTGCTCTGTGAATCCTACACTAGTGAAGTCCTCATCTACACATGAAAGTAGTAATGGTCCTTCTGGAGGAATTCTAAGTCATGATCAAACAGTACATGGTTGCATGCAACACTCAAGTTTCTTTCCACGGATTTTGCCTTCAAAAAAGAATCGCAAGACAAAGTCTGATTTTGGCCTTGTGGTTGGAGGATGCCTCCCTGAACTAATGGCTGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTCTTGTATGAGCTTTTGCATGGGATAACACCCTTTAAAGGTTCTGGAAACAAAGCTACCCTTTTCAATGTTGTAGGACAACCTTTAAGGTTTCCAGAAAAACCAGTTGTTAGCAAAGTTGCAAGAGACCTTATAGAAGGGTTGTTGGTGAAAGAGCCTAAAAAAAGATTTGCTTACAAGAGAGGTGCCACAGAAATAAAGCAACACCCTTTCTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCTATTATACCAGAACCTTTTGATTTTTCTAAGTACGATAGAAAAACAGATATTCCAGCACTGGATAAAAAGGTTGCAAATATTATTGCAAGTGATAAAAGCAATCATACAAAACCAGATTCATCTTATGAAGATTTTGAGTACTTTTAA 885 0.3853 MSYCYRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDKGHIMLSDFDLSLRCSVNPTLVKSSSTHESSNGPSGGILSHDQTVHGCMQHSSFFPRILPSKKNRKTKSDFGLVVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGSGNKATLFNVVGQPLRFPEKPVVSKVARDLIEGLLVKEPKKRFAYKRGATEIKQHPFFHGVNWALVRSATPPIIPEPFDFSKYDRKTDIPALDKKVANIIASDKSNHTKPDSSYEDFEYF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00846 294 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00846 294 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00846 294 Gene3D Transferase(Phosphotransferase) domain 1 108 250 - -
Vimu5g00846 294 ProSiteProfiles AGC-kinase C-terminal domain profile. 233 294 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu5g00846 294 FunFam Serine/threonine-protein kinase OXI1 2 55 - -
Vimu5g00846 294 Gene3D Transferase(Phosphotransferase) domain 1 5 52 - -
Vimu5g00846 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Vimu5g00846 294 PANTHER FLIPPASE KINASE 1-RELATED 5 258 - -
Vimu5g00846 294 Pfam Protein kinase domain 125 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00846 294 Pfam Protein kinase domain 6 58 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00846 294 FunFam Serine/threonine-protein kinase AGC1-7 125 250 - -
Vimu5g00846 294 SUPERFAMILY Protein kinase-like (PK-like) 5 261 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00846 Vimu-Chr5 10968529 10969413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00846 6 294 AGC Kinase Gene Family AT1G79250 70.358 9.21e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu5g00846 Pkinase 2.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00846 - - vun:114169466 567.385