Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00844 TTGCTTTGGTTTTTTGTATATACCCGTCTATTATGTACTATAGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAAAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATTCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCTAAGGTTTCCTCTGAAAATGATGATGTATCTGCTGGCTTACCTGAGAGGCCATCAGAGCCCCTCTGCTCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTTCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTCGTCTGATGAGTTGAGTCATACTGCTGCTCAGACAGAAATAAATTCTATGATAGGAGGGGCACTTGGAGATACGCAAACAATTAAGTCTCTAATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTACGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGCGCTTCTGTTTTGCCATCCTCAGCTACTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGGTAATGTGGAAATTGCTACTAATTCAAATTGCAAATAATGTTGTCCCTGATGCTCGTTATTGTGGGTCTCAGGTGGGAATTGCAGAAACCATCTATCCTCAACGACCTGGCCAGATCGAATGTGATTTTTACATGAAAACTGGCGACTGTAAATTCGGTGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCGGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCGACCTGCAAGTTTGACCACCCTCCACCTGGAGAAGTTGTGGAGATGGCAAAATCTCAAGGAACATCAGCCGATGGAGGGGAAGCAGAATACTAA 1302 0.4324 MLWFFVYTRLLCTIALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENDDVSAGLPERPSEPLCSFYMKTGKCKFGASCKFHHPKDIQIQSSDELSHTAAQTEINSMIGGALGDTQTIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASVLPSSATSLNIGLLSPAVSVYQAFDPRLSNPMVMWKLLLIQIANNVVPDARYCGSQVGIAETIYPQRPGQIECDFYMKTGDCKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAEY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 334 362 IPR000571 GO:0046872
Vimu5g00844 433 Gene3D - 333 426 - -
Vimu5g00844 433 FunFam Zinc finger CCCH domain-containing protein 37 93 140 - -
Vimu5g00844 433 SMART c3hfinal6 55 82 IPR000571 GO:0046872
Vimu5g00844 433 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vimu5g00844 433 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Vimu5g00844 433 SMART c3hfinal6 334 361 IPR000571 GO:0046872
Vimu5g00844 433 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Vimu5g00844 433 SMART c3hfinal6 107 134 IPR000571 GO:0046872
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vimu5g00844 433 FunFam zinc finger CCCH domain-containing protein 37 332 425 - -
Vimu5g00844 433 Gene3D - 147 261 - -
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 107 135 IPR000571 GO:0046872
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 230 253 IPR036855 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 109 134 IPR000571 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 337 360 IPR000571 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 176 IPR000571 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 57 81 IPR000571 GO:0046872
Vimu5g00844 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 252 IPR000571 GO:0046872
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 112 133 IPR036855 GO:0046872
Vimu5g00844 433 PANTHER PROTEIN PHOSPHATASE RELATED 215 421 - -
Vimu5g00844 433 Gene3D - 13 92 - -
Vimu5g00844 433 Gene3D - 93 142 - -
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 336 362 IPR036855 GO:0046872
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 55 82 IPR036855 GO:0046872
Vimu5g00844 433 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 388 411 IPR036855 GO:0046872
Vimu5g00844 433 FunFam Zinc finger CCCH domain-containing protein 37 14 92 - -
Vimu5g00844 433 SUPERFAMILY CCCH zinc finger 152 177 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00844 Vimu-Chr5 10945334 10960689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00844 331 413 C2H2 Transcription Factor Family AT5G18550 47.619 1.17e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g00844 zf-CCCH 1.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00844 - - pvu:PHAVU_011G180700g 796.964