Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00829 ATGCAGATGGAAATGGAGAATGTTACAAATGGTCAAACATATGCAGAATATCCATTGGAGAAGCCTATTATCCATGGAAACCTCAAGTCTAAGAACATCCTTTTAGACCGCTCCTACCAGCCCTACATCTCAGATTCTGGCCTACATCTTCTGCTGAATCCTACTGCTGGACAAGAAATGCTTGAAAGTTCAGCAGCACAGGGTTACAAGGCACCTGAGCTCATCAAAATGAAGGATGCTACTGAAGAGAGTGATATATATAGCCTTGGTGTGATCTTGCTGGAACTGCTTTCAGGAAAGGAACCTATCAATGAGCATCCTACTCCTGATGAGGATTTCTATTTGCCAAATTTCATGAGAAATGCAGTCCTTGGACACAGAATTGCTGATCTATACCACCCTGCCATTCTTCTCAGAAACAGCAGAGAGGATAGTGTTCCAGTCACAGAAGAATTCATCCTCAAAGTTTTTCAACTTGCTATGGCTTGTTGCTCCCCTTCACCCTCAGTTAGACCTAACATAAAACAAGTCCTCAAGAAACTTGAAGAAATTATTCACATGAAGAATCATAGCTTGAAACTAAAGCTACCAAATTCTGAACTCCAAATCTCAGATCTGGCTCCCACTTGTGACATGGACAATGCCACTCATCCTGATACTAATTGCAGACATTTGAAGGGAAATTACTCAGATTCTTTTACTGTCAAGAATGTTCTGCTGCTGTCCAAGAATTTGTAG 738 0.4119 MQMEMENVTNGQTYAEYPLEKPIIHGNLKSKNILLDRSYQPYISDSGLHLLLNPTAGQEMLESSAAQGYKAPELIKMKDATEESDIYSLGVILLELLSGKEPINEHPTPDEDFYLPNFMRNAVLGHRIADLYHPAILLRNSREDSVPVTEEFILKVFQLAMACCSPSPSVRPNIKQVLKKLEEIIHMKNHSLKLKLPNSELQISDLAPTCDMDNATHPDTNCRHLKGNYSDSFTVKNVLLLSKNL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00829 245 SUPERFAMILY Protein kinase-like (PK-like) 14 182 IPR011009 -
Vimu5g00829 245 Pfam Protein kinase domain 20 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00829 245 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00829 245 Gene3D Transferase(Phosphotransferase) domain 1 5 205 - -
Vimu5g00829 245 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00829 Vimu-Chr5 10624527 10625613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00829 19 184 Carbohydrate Esterase AT5G61570 60.479 8.37e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu5g00829 Pkinase 1.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00829 - - gmx:100788898 325.479