Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00828 ATGAATCTGTCTCATCACACCCCAGATCTTAATTATCCCATTTATCCAAGACTCTTGTGTGTGTCATTCGGTCCAATTGTGTTGCTAGCAGTACTCACTACTGGGTGTGCTGAAAGATCAGGTTTTTCAGTGGTACAAGGAGAACCACCCTCCATGTTGATACTGGTTCTTGGACTAGTTTCAGCTACTTTGTTAGTGATTGTTGCAGGTTATGTGTTGTATTGCAAGAAAAGAGTATCAAGGTATGAGAGTAAGGACATTGAAAGCTCGGAACACAAGGAGGAGGAGGTGGCTCAGAAGGAGGATTTGATGATCTTTCAAGGTGGGGAGGACCTTACAATATGTGACATATTGGATGCTCCAGGGGAAGTGATTGGAAAATCCAACTATGGAACACTGTATAAGGCCTTGTTGCAGAGGAGCAACAAGGTGAGGCTGCTCAGGTTTCTGAGGCCAGTGTGCACTGCAAGAGGTGATGAATTGGATGAGATGATTCAATTTCTTGGAAGGATACGGCATCCTAACTTGGTTCCTCTTCTGGGGTTTTACACTGGGCCAAGGGGTGAGAAGCTTCTTGTTCATCCCTTCTATAGACATGGGAATCTTACTCAATTCATAAGAGGTAAATAA 630 0.4381 MNLSHHTPDLNYPIYPRLLCVSFGPIVLLAVLTTGCAERSGFSVVQGEPPSMLILVLGLVSATLLVIVAGYVLYCKKRVSRYESKDIESSEHKEEEVAQKEDLMIFQGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCTARGDELDEMIQFLGRIRHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRGK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00828 209 ProSiteProfiles Protein kinase domain profile. 119 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00828 209 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 67 207 - -
Vimu5g00828 209 Pfam Protein tyrosine and serine/threonine kinase 122 208 IPR001245 GO:0004672|GO:0006468
Vimu5g00828 209 SUPERFAMILY Protein kinase-like (PK-like) 122 208 IPR011009 -
Vimu5g00828 209 Gene3D Phosphorylase Kinase; domain 1 84 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00828 Vimu-Chr5 10622436 10623505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00828 86 207 Carbohydrate Esterase AT5G61570 62.791 2.66e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu5g00828 PK_Tyr_Ser-Thr 8.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00828 - - gmx:100802295 290.812