Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00818 ATGACCATTGATTCTAATTACTTAGTAGATGTTGATGAAAATGGAATGATATATGGAATGACACAACATCATGGACTGCAGCATCAATCTAGTCACTCACACAATTTCATTCGGAGCAATTATTTGGATTTGGTTTGGTATCCATATCTTCCAATCTCATATGTACAAGTTCCACTTCCGAGTACTAATGTAAGCTTATTAGAAGAGAATACAAGAATGGGTCTCCGTAGAAGAAGAAGAAGACATCATCGTAGATTTCTCCATCGGCAATATCGTACGCAAGATATCAGAGGTCACTCGAATTTTCATTCATATGGAACTGCTTCACCATATAGAGTTCCAGAAACAACAAATCATTCAAGAAGTTTTTCAATGCCTATACAAAATGCACCTAACAGAGACAACATGCATAATCTTCATCCTCCTGCGTTTCGTGAATTTCCTTTGTATATGGTCATGGACACTGATGACATGTCATACGAGACACTTTTTAATGTGCAGGAATTTCCTTCATTAGGTGACCCTCATAGTGATATGCGTTTGGACATTGATGGCATGTCATATGAGGAGCTTCTTGAGTTAAGTGAATTGATAAATGATAATTCGGAAAGGGGTTTGGAAAGGGGTTTGTCTGAAGACATTATTGCAAGATATATGCAGACAAAAAGTTATCTATTACCAGAGAACTTGGAGAATCATGAATATGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATATCATGCAGAGTGTGTAAAGAGATGGTTACATGAGAAAAATGTTTGTCCCATGTGCAAATCAATAGGATTGACTATTGAATAG 861 0.36 MTIDSNYLVDVDENGMIYGMTQHHGLQHQSSHSHNFIRSNYLDLVWYPYLPISYVQVPLPSTNVSLLEENTRMGLRRRRRRHHRRFLHRQYRTQDIRGHSNFHSYGTASPYRVPETTNHSRSFSMPIQNAPNRDNMHNLHPPAFREFPLYMVMDTDDMSYETLFNVQEFPSLGDPHSDMRLDIDGMSYEELLELSELINDNSERGLERGLSEDIIARYMQTKSYLLPENLENHEYDICIICQDEYKNKEEIGILQCGHEYHAECVKRWLHEKNVCPMCKSIGLTIE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00818 286 Pfam Ring finger domain 237 279 IPR001841 -
Vimu5g00818 286 CDD RING-H2_RNF24-like 236 280 - -
Vimu5g00818 286 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Vimu5g00818 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 65 283 IPR045191 GO:0061630
Vimu5g00818 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 282 IPR013083 -
Vimu5g00818 286 SMART ring_2 238 278 IPR001841 -
Vimu5g00818 286 SUPERFAMILY RING/U-box 237 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00818 Vimu-Chr5 10500884 10502271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00818 150 283 C3H Transcription Factor Family AT2G15530 40.146 1.53e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00818 K19041 - vra:106752786 247.284