Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00797 ATGAACACATCTTTGGATGATATTGAAATTGATCAATTACATGGCAAAGTTGCAGAAGATATAAATGAAAATCATGTTCAACCTAACTCAATCCATCCATCAGTTGGAATGGTTTTTGAAAGTGTTAATCAAGCCAAGTCATTTTATAGACAATATGCAATATCAAAGGGCTTTGGAATTCGAACAAGGAGTTCAAGGAAGAACAACAAAAACGAATTGTGTTACTTCATGATGGTGTGTTCTAGGGCTGGAAAATTTGTCGCATCCAATCCAAATGAAATGATTGGACGTCCAACACAGGCTAATGATTGTGCAGCTCGAGTGATTGTATCAAAAAGAGATGAGAAGTGGTACATTTCGGCATTTGATGATGTACATACTCATGATCTTAGTCCAACAAAGTCAAGATTGTTCCGAGGCAATAAAAGGATGAATCTGAATGTGAAGAGAACACTAGACTTAAATGCAGAAGCAGGAGTTAGGATTAACAAGAGTTTTCGATCCTTGGTTTGTGCTACAGGAGGTTATGAAAACATGGAGTTTGTGGAACAAGATGTTAGAAATTATGTCGCCAAACAGAGAAGAGCATTATCAAAAGATGGTGATGCCAAGGCACTCTTAAACCATTTCTCTTCCATGAGAAAATTGAATAAGGATTTCTTTTTCAACATTGATGTTGATGACGACAACCGCATATTGAATGTATTTTGGGCTTATGCACGAAGTAGGGCAGCTTGTGAGTACTTTGGTGATGTCATATCTTTTGACACGACATACTTAACAAATAAGTATGACATGCCGTTTGCTCCTTTCGTTGGCGTCAACCATCATGGTCAATCAATATTGTTAGGTTGTGGATTGTTATGCTCAGAGGACACAGATTCATTTGTTTGGCTATTTAATTCATGGCTTCGGTGCATGTCCTATAGAGCGCCCCAGGGAATTGTTACCGATCAATGCAAAGCAATGAAGAAAGCAATAGAAATCGTGTTTCCAAACAGTCGTCATAGGTGGTGCTTGTGGCATATAATGAAAAAAATACCTGAGAAGTTACAAGGCTATGCCGCTTACAAAGATATCAAGCGACAACTTAAGCAAGTTGTGTACAATTCTGATTCAGTTGACGACTTTGTTTACGGTTGGGAAAGGATGGTAACAATATTTTCACTACAAACAAACGAATGGCTCTGTTCACTTTACGAAGAGCGAAGCAGGTGGGTTCCATGTTACCTGAGAAACAATTTTTGGGCTGGCATGTCAACCACTCAAAGAAGCGAGAGTATGAATGCATTTTTTGATGGATATATTAACTCACAAACTACTCTTCAAGAATTTGTTAAACAATATGACAATGCACTACAACACAAGACAGAAAAAGAAACCCAAGCTGACTTCACATCCTTAAACACAACTCTTCCATGTGGGTCACAATCACTCATTGAGCGACAATTCCAAAAGAATTACACACATGCTAAGTTTGCAGAAATACAGTCAGAATTTAGAGGTAAAATTAATTGTTTTGTTGATGGTGTTGATGTAGAAGATAAATCATCATATTACAAGGTGACAGAGGACTCCATTCATAATGAGATAAGGGAAGAGAGGGTATTCAAGGTTACATTTGAACGAGATACAAAGAATGTGAGTTGTAGTTGTTTGCTTTTTGAGTTTAGGGGTATTATTTGTAGACATTGTGTATGTGTCCTGGCACAAGAGCGAGTAACACAACTTCCTGCTAAGTACGTACTCACAAGATGGTGTAAAAATGTCCGCAGAAAACACACATATATTAGAGCAACATACAACAACAAAGAAAAGGATCCACATATTGAACGATATGATAACTTATGCAAGACTTTTGCTGATATTGCTGAGATTGCGTGTGAGTCAACAAACATGACAGAATTATTGATTGACCACCTTAGATCATTTGTGGACCATCATGGCCTACAAATTTCACCTTCACCTACACCTTACGTCAACAACACCACTCACAAAGAACAACAACACATGCATCATACTAACGTAGCTCATGATGTAGACACAAATGCAAACAATGTTGACATCCAAAGCCCTCAAGTTGTGAAGCGAAAGGGTCGACCTAGGACAAAAAGGTTGAAATCCACATCTGAAAGACTAACAAGGAAGAAACAATGGGCAAAACGAAGTTGTCCAACATCTATTCATATTGCTGATGCTATGATGGACGGACCAAATACAACATTCAGCAATGAAATTGATGGGACACTAAACACAGATTACACAACAACAAACTCAATTGGACCGGTATCAAGTGTGCAATCCCCTGGGTTCATGTCACTGCTTGCATCATTACACAATGACATGCAAAACACGCAATCGTCCACAACTAACATCGAGAATGTTTTTCCGTAA 2394 0.3818 MNTSLDDIEIDQLHGKVAEDINENHVQPNSIHPSVGMVFESVNQAKSFYRQYAISKGFGIRTRSSRKNNKNELCYFMMVCSRAGKFVASNPNEMIGRPTQANDCAARVIVSKRDEKWYISAFDDVHTHDLSPTKSRLFRGNKRMNLNVKRTLDLNAEAGVRINKSFRSLVCATGGYENMEFVEQDVRNYVAKQRRALSKDGDAKALLNHFSSMRKLNKDFFFNIDVDDDNRILNVFWAYARSRAACEYFGDVISFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLCSEDTDSFVWLFNSWLRCMSYRAPQGIVTDQCKAMKKAIEIVFPNSRHRWCLWHIMKKIPEKLQGYAAYKDIKRQLKQVVYNSDSVDDFVYGWERMVTIFSLQTNEWLCSLYEERSRWVPCYLRNNFWAGMSTTQRSESMNAFFDGYINSQTTLQEFVKQYDNALQHKTEKETQADFTSLNTTLPCGSQSLIERQFQKNYTHAKFAEIQSEFRGKINCFVDGVDVEDKSSYYKVTEDSIHNEIREERVFKVTFERDTKNVSCSCLLFEFRGIICRHCVCVLAQERVTQLPAKYVLTRWCKNVRRKHTYIRATYNNKEKDPHIERYDNLCKTFADIAEIACESTNMTELLIDHLRSFVDHHGLQISPSPTPYVNNTTHKEQQHMHHTNVAHDVDTNANNVDIQSPQVVKRKGRPRTKRLKSTSERLTRKKQWAKRSCPTSIHIADAMMDGPNTTFSNEIDGTLNTDYTTTNSIGPVSSVQSPGFMSLLASLHNDMQNTQSSTTNIENVFP 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00797 797 Pfam SWIM zinc finger 549 568 IPR007527 GO:0008270
Vimu5g00797 797 SMART 26again6 548 575 IPR006564 GO:0008270
Vimu5g00797 797 Pfam FAR1 DNA-binding domain 47 131 IPR004330 -
Vimu5g00797 797 Pfam MULE transposase domain 252 346 IPR018289 -
Vimu5g00797 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 645 IPR031052 GO:0006355
Vimu5g00797 797 ProSiteProfiles Zinc finger SWIM-type profile. 537 573 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00797 Vimu-Chr5 10206302 10208894 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g00797 MULE 8.5e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00797 - - vra:106770356 1413.67