Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00744 ATGGCCAAAATTTCTTTTGAGAAGGCTTTTTGTGAATTTCCATCAAATCTGAGGGTACTAGCTGTTGACACTAACTCTAATGTTCTTGAATTCATCAAGAAGATGTGTGAGGAATATTGCTATGAAGTTATCACATGCACAGAATCGCTACTTGCTACTGAGATTTTGCAGGAAAGAAAAGTGGGGATTGATTTAGTACTGATGGAGGTTCGTATGCCAAAGATGGATGGCTATGAATTCTTACTTGCCAACCAAGAAATTGATGTTCCTATCATCATGATGTCTTGGGATGATAACAAGAAATCTGTAATGAAGAGTATAAAGCTTGGAGGTTGTGATTATTGGATCAAGCCTTTGCATGAGGATCAACTCAAGAACATGTTAAAAGTTGATAATGTTGGTGAATCACATTCGAGAAAGAAGTCTCGTATGGTATGGACATCAGAACTGCATGGTAAATTTGTCAAAGCTGTCAATCATATTGGACTTGCTAATGCTGTGCCAAAGAAAGTTCTTGAGCTCATGAATATTCCTGGTTTGACAAGAAACCATGTTGGTAGTCACTTACAGAAATATAGAAATACTTTGAAGAGAAAACCTCAGCAATCTGCTACAGATATACCACTGCATAACCATCTTCATGCAGAAGAAGCTTTGAATATGGCACTTGATCACCCAATGGCTCCCTATACTGCTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTGTCAGTGGATACATTGCAAGAACAGCAGCAAATGCAACCGTGGATGGAGTCTTTCTTTTAA 801 0.3833 MAKISFEKAFCEFPSNLRVLAVDTNSNVLEFIKKMCEEYCYEVITCTESLLATEILQERKVGIDLVLMEVRMPKMDGYEFLLANQEIDVPIIMMSWDDNKKSVMKSIKLGGCDYWIKPLHEDQLKNMLKVDNVGESHSRKKSRMVWTSELHGKFVKAVNHIGLANAVPKKVLELMNIPGLTRNHVGSHLQKYRNTLKRKPQQSATDIPLHNHLHAEEALNMALDHPMAPYTANFVFPQSSETMPNSVSVDTLQEQQQMQPWMESFF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00744 266 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 213 IPR045279 GO:0009736
Vimu5g00744 266 ProSiteProfiles Response regulatory domain profile. 18 132 IPR001789 GO:0000160
Vimu5g00744 266 SUPERFAMILY CheY-like 15 129 IPR011006 -
Vimu5g00744 266 SUPERFAMILY Homeodomain-like 139 198 IPR009057 -
Vimu5g00744 266 SMART REC_2 17 128 IPR001789 GO:0000160
Vimu5g00744 266 CDD REC_typeB_ARR-like 19 129 - -
Vimu5g00744 266 NCBIfam myb-like DNA-binding domain, SHAQKYF class 141 194 IPR006447 GO:0003677
Vimu5g00744 266 FunFam Two-component response regulator 137 199 - -
Vimu5g00744 266 Pfam Myb-like DNA-binding domain 143 193 IPR001005 -
Vimu5g00744 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 197 IPR017930 -
Vimu5g00744 266 Gene3D - 16 141 - -
Vimu5g00744 266 Gene3D - 142 199 - -
Vimu5g00744 266 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00744 Vimu-Chr5 8906647 8907984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00744 12 198 Response Regulator Gene Family AT4G31920 36.245 1.89e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu5g00744 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00744 - - vra:106778511 501.901