Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00738 | ATGGATCGAGAATGGGGATCGAAGCCCGGGAGCGGAGGCGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTAGCGAAGGACCCGTATTTCATGCGGAACCACCTTGGGAGCTACGAGTGCAAACTGTGTCTCACTCTCCACAACAACGAGGGCAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAACGTGCTGCTCGCGAGGCCAAGGACGCCCCCGCCCAGCCACAACCCCACAAGCGCAAAGTCACCCTTCGCAAAACAGTTAAGATTGGACGCCCTGGGTACCGTGTGACCAAGCAGTATGATCCTGAGACCAAGCAAAGATCTCTACTGTTCCAGATTGAGTATCCCGAGATTGAAGACCTTGCCAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAGAGGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTTGCCGCTGAACCGTATGAAATAATTGCATTCAAGGTGCCCAGCACGGAGATTGATAAGTCTACTCCAAAGTTTTTCTCGCACTGGGATCCGGACTCAAAGATGTTCACGTTGCAATTGTATTTTAAAACCAAGCCACCGGAGGCAAACAAACCACAGCCTCCCTCTGCAGCCAATGGCACAGCGACATCTGGTGTTCCACCAAGGCCTTTGCCCCCACCACCTCAAGCTCCACTACCCCCACCTCCTCCTCCCCCACAAGGGCTACCTCCTGGTGGACCTATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCAGGATCCATGCCACCTCCCCCTCCTATGGCTGCAGCTAACGGTCCTAGACCTGCACCTTCCGGTGGAATGCCATCTGTCCCACCCCCACCCCCTATTGCAAGTGGGACATCGGGTTTCAACATGGGTACTAGACCTCCATCAATGCCTCCTCCACAAGGTTTTCCTACCCAACCAATGCAGAATCAGGGTGTCCGTCTTCCTCCGCCACCCCCTAACATGGGACACTAG | 1053 | 0.5565 | MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPPSAANGTATSGVPPRPLPPPPQAPLPPPPPPPQGLPPGGPMANPPRAPPPPMPGSMPPPPPMAAANGPRPAPSGGMPSVPPPPPIASGTSGFNMGTRPPSMPPPQGFPTQPMQNQGVRLPPPPPNMGH | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00738 | 350 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | - | - | |
| Vimu5g00738 | 350 | Gene3D | - | 94 | 218 | - | - | |
| Vimu5g00738 | 350 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 348 | - | - | |
| Vimu5g00738 | 350 | MobiDBLite | consensus disorder prediction | 319 | 350 | - | - | |
| Vimu5g00738 | 350 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676|GO:0008270 | |
| Vimu5g00738 | 350 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 110 | 204 | IPR031781 | - | |
| Vimu5g00738 | 350 | MobiDBLite | consensus disorder prediction | 213 | 350 | - | - | |
| Vimu5g00738 | 350 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
| Vimu5g00738 | 350 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vimu5g00738 | 350 | FunFam | Splicing factor 3a subunit 2 | 94 | 218 | - | - | |
| Vimu5g00738 | 350 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 82 | IPR036236 | - | |
| Vimu5g00738 | 350 | SMART | CactinC_cactus_3 | 89 | 217 | - | - | |
| Vimu5g00738 | 350 | MobiDBLite | consensus disorder prediction | 234 | 309 | - | - | |
| Vimu5g00738 | 350 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g00738 | Vimu-Chr5 | 8865679 | 8867822 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00738 | 1 | 298 | C2H2 Transcription Factor Family | AT2G32600 | 73.913 | 6.26e-138 | 391 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g00738 | K12826 | - | gmx:100791333 | 543.888 |