Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00736 | ATGGATCGAGAATGGGGATCGAAGCCCGGGAGCGGAGGCGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTAGCGAAGGACCCGTATTTCATGCGGAACCACCTTGGGAGCTACGAGTGCAAACTGTGTCTCACTCTCCACAACAACGAGGGCAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAACGTGCTGCTCGCGAGGCCAAGGACGCCCCCGCCCAGCCACAACCCCACAAGCGCAAAGTCACCCTTCGCAAAACAGGTGCCTCTTGTTTATTTTTCCCTCTTTTACCCCTTTTCACCTATGATCCTGAGACCAAGCAAAGATCTCTACTGTTCCAGATTGAGTATCCCGAGATTGAAAACCTTGCCAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAGAGGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTTGCCGCTGAACCGTATGAAATAATTGCATTCAAGGTGCCCAGCACGGAGATTGATAAGTCTACTCCAAAGTTTTTCTCGCACTGGGATCCGGACTCAAAGATGTTCACGGTTAGTTCATGTGCTCCTCTTGTCTGTCTGTGA | 651 | 0.533 | MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTGASCLFFPLLPLFTYDPETKQRSLLFQIEYPEIENLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTVSSCAPLVCL | 216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00736 | 216 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vimu5g00736 | 216 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | - | - | |
| Vimu5g00736 | 216 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - | |
| Vimu5g00736 | 216 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676|GO:0008270 | |
| Vimu5g00736 | 216 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 82 | IPR036236 | - | |
| Vimu5g00736 | 216 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 122 | 205 | IPR031781 | - | |
| Vimu5g00736 | 216 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 207 | - | - | |
| Vimu5g00736 | 216 | SMART | CactinC_cactus_3 | 109 | 203 | - | - | |
| Vimu5g00736 | 216 | Gene3D | - | 119 | 209 | - | - | |
| Vimu5g00736 | 216 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g00736 | Vimu-Chr5 | 8858885 | 8859947 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00736 | 1 | 207 | C2H2 Transcription Factor Family | AT2G32600 | 84.615 | 8.43e-119 | 337 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g00736 | K12826 | - | gmx:100818114 | 365.925 |