Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00733 ATGGCCCAAGGGCCCAAGAGCCCAAAAGGGAGGGAACAGAATAACAATGATCTCAAAAAGCATGTGTGGCGAGATGGATCGAGAATGGGGATCGAAGCCCGGGAGCGGAGGCGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTAGCGAAGGACCCGTATTTCATGCGGAACCACCTTGGGAGCTACGAGTGCAAACTGTGTCTCACTCTCCACAACAACGAGGGCAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAACGACGCCCCCGCCCAGCCACAACCCCACAAGCGCAAAGTCACCCTTCGCAAAACAGATTGGACGCCCTGGGTACCGTGTGACCAAGCAGTATGATCCTGAGACCAAGCAAAGATCTCTACTGTTCCAGATTGAGTATCCCGAGATTGAAAACCTTGTCAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAGAGGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTTGCCGCTGAACCGTATGAAATAATTGCATTCAAGAAATTTGCTTTATGCTCAATTAAGCTACATTTTCAGGTGCCCAGCACGGAGATTGATAAGTCTACTCCAAAGTTTTTCTCGCACTGGGATCCGGACTCAAAGATGTTCACGGTTAGTTCATGTGCTCCTCTTGTCTGTCTGTGA 732 0.5219 MAQGPKSPKGREQNNNDLKKHVWRDGSRMGIEARERRRGVGAERSHRPARASPATGSGDDRPSEGPVFHAEPPWELRVQTVSHSPQQRGQLLGPHSGQAPPDQLGQTTPPPSHNPTSAKSPFAKQIGRPGYRVTKQYDPETKQRSLLFQIEYPEIENLVKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKKFALCSIKLHFQVPSTEIDKSTPKFFSHWDPDSKMFTVSSCAPLVCL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00733 243 MobiDBLite consensus disorder prediction 12 45 - -
Vimu5g00733 243 MobiDBLite consensus disorder prediction 1 132 - -
Vimu5g00733 243 MobiDBLite consensus disorder prediction 79 93 - -
Vimu5g00733 243 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 126 232 IPR031781 -
Vimu5g00733 243 Gene3D - 112 236 - -
Vimu5g00733 243 SMART CactinC_cactus_3 112 230 - -
Vimu5g00733 243 PANTHER SPLICING FACTOR 3A SUBUNIT 2 124 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00733 Vimu-Chr5 8825899 8827072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00733 125 234 C2H2 Transcription Factor Family AT2G32600 79.091 3.32e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00733 K12826 - gmx:100818114 189.889