LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g00732	ATGTCTAACAGAAACGAATATTCTTCTTTACCCGTTAGCTCCTATTTAGAATTGCAACGTCAGAACGAGTCCTCAAAATCTGTAGGCATTCCTTCTTATGACGAATCCGAAGTGTATTTGGGATCCAAAATCGAAGACGAGGATGAAGATTTCGAAACGGACATCGATAATTACCCCCTTGTGATTGTGGGGTCCAATAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACTACAGTTATTGGGGCAGGGATCATGGCTCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCGTGGAACTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGAATCGTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAACCTGTGAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGATCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATTGATTCATTGAGCTTGACCTCGGCTGCCTCCGTGGCTCTTGCTGTTTTGTTTGTCGTTGTTGCTTTTACAGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGAACAACGGTCTCCTCAGAAAATGAACATGGTTGGCAGGTACACCACAATTTTGTGCATCCTAGTTTATGCTTCCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTACTGACTAATTTTGATAAGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCACTGCGCCAAACAGTGGACGCATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACCATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTATTTCATTGAGACTAAGACATCTGGGAGATCTAAGCTACGGGGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTGACTGTTAGCATAGTAGGAGTTGTTAGTAATGTTTATAGCCTTGAGAGTAAGTCTTAG	1446	0.4198	MSNRNEYSSLPVSSYLELQRQNESSKSVGIPSYDESEVYLGSKIEDEDEDFETDIDNYPLVIVGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKESSYGEVVQHAMGKPVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELEQRSPQKMNMVGRYTTILCILVYASTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFEGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLISLRLRHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLESKS	481

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g00732	481	PANTHER	AMINO ACID TRANSPORTER	66	465	-	-
	Vimu5g00732	481	Pfam	Transmembrane amino acid transporter protein	69	470	IPR013057	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g00732	Vimu-Chr5	8820990	8822435	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g00732	5	481	Amino Acid or Auxin Permease AAAP Family	AT1G80510	71.458	0.0	648

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g00732	-		-	var:108333183	766.918

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