Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00731 ATGGATCGAGAATGGGGATCGAAGCCCGGGAGCGGAGGCGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTAGCGAAGGACCCGTATTTCATGCGGAACCACCTTGGGAGCTACGAGTGCAAACTGTGTCTCACTCTCCACAACAACGAGGGCAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAACGTGCTGCTCGCGAGGCCAAGGACGCCCCCGCCCAGCCACAACCCCACAAGCGCAAAGTCACCCTTCGCAAAACAGTTAAGATTGGACGCCCTGGGTACCGTGTGACCAAGCAGTATGATCCTGAGACCAAGCAAAGATCTCTACTGTTCCAGATTGAGTATCCCGAGATTGAAGACCTTGCCAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAGAGGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTTGCCGCTGAACCGTATGAAATAATTGCATTCAAGGTGCCCAGCACGGAGATTGATAAGTCTACTCCAAAGTTTTTCTCGCACTGGGATCCGGACTCAAAGATGTTCACGATTAGTTCATGTGCTCCTCTTTTGCAATTGTATTTTAAAACCAAGCCACCGGAGGCAAACAAACCACAGCCTCCCTCTGCAGCCAATGGCACAGCGACATCTGGTGTTCCACCAAGGCCTTTGCCCCCACCACCTCAAGCTCCACTACCCCCACCTCCTCCTCCCCCACAAGGGCTACCTCCTGGTGGACCTATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCAGGATCCATGCCACCTCCCCCTCCTATGGCTGCAGCTAACGGTCCTAGACCTGCACCTTCCGGTGGAATGCCATCTGTCCCACCCCCACCCCCTATTGCAAGTGGGACATCGGGTTTCAACATGGGTACTAGACCTCCATCAATGCCTCCTCCACAAGGTTTTCCTACCCAACCAATGCAGAATCAGGGTGTCCGTCTTCCTCCGCCACCCCCTAACATGGGACACTAG 1074 0.5531 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTISSCAPLLQLYFKTKPPEANKPQPPSAANGTATSGVPPRPLPPPPQAPLPPPPPPPQGLPPGGPMANPPRAPPPPMPGSMPPPPPMAAANGPRPAPSGGMPSVPPPPPIASGTSGFNMGTRPPSMPPPQGFPTQPMQNQGVRLPPPPPNMGH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00731 357 MobiDBLite consensus disorder prediction 241 316 - -
Vimu5g00731 357 Gene3D - 94 224 - -
Vimu5g00731 357 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 355 - -
Vimu5g00731 357 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Vimu5g00731 357 Pfam Zinc-finger of C2H2 type 52 76 - -
Vimu5g00731 357 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Vimu5g00731 357 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Vimu5g00731 357 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vimu5g00731 357 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g00731 357 FunFam Splicing factor 3a subunit 2 94 225 - -
Vimu5g00731 357 MobiDBLite consensus disorder prediction 220 357 - -
Vimu5g00731 357 SMART CactinC_cactus_3 89 224 - -
Vimu5g00731 357 MobiDBLite consensus disorder prediction 326 357 - -
Vimu5g00731 357 Gene3D Classic Zinc Finger 46 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00731 Vimu-Chr5 8818029 8820168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00731 1 305 C2H2 Transcription Factor Family AT2G32600 72.876 3.99e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00731 K12826 - gmx:100791333 536.954