Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00729 ATGGCAGAAAGCAAAGCTAACGTGACGAAGCACGAAGCAACGAGATACATAAGGCAGAAGGCGTCCCTTGGAAAAGGTATGAAGGAGGATTCTGACTGCGCTGAAGAAGCAGAGAAGAACGATAGTGTTAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCATCAACAACAGGAACAACAACGACAACAGCAACAATAGATGACAATGATAATGAGCCAGGAAGACCAGGAGCGAATTCCAACAACAACAGAGAGAAAGGGAAAGAGAAAGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGTTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTAGAGGGCACCGTGCGAGTCACAAGAACGTGAAAGGGTGTTTTGCGAACATTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAGTGATGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCTAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTCGATTTGAGGTTGGGACTCTAG 765 0.5033 MAESKANVTKHEATRYIRQKASLGKGMKEDSDCAEEAEKNDSVNGRGGVEGEEILRSTSMHGVRQEVLVVEGTLRAHAMDQPSAQRKKTSSSTTGTTTTTATIDDNDNEPGRPGANSNNNREKGKEKEEEVQQWQFECSSCNRVFGSHQALRGHRASHKNVKGCFANIGSNVSIGLGIGSSGKCEEENVNMNMSDDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRLGL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00729 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Vimu5g00729 254 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Vimu5g00729 254 Pfam C2H2-type zinc finger 136 159 - -
Vimu5g00729 254 Pfam C2H2-type zinc finger 198 222 - -
Vimu5g00729 254 MobiDBLite consensus disorder prediction 83 118 - -
Vimu5g00729 254 MobiDBLite consensus disorder prediction 77 128 - -
Vimu5g00729 254 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 91 247 - -
Vimu5g00729 254 MobiDBLite consensus disorder prediction 1 64 - -
Vimu5g00729 254 Gene3D Classic Zinc Finger 133 220 - -
Vimu5g00729 254 MobiDBLite consensus disorder prediction 1 46 - -
Vimu5g00729 254 SMART c2h2final6 198 220 IPR013087 -
Vimu5g00729 254 SMART c2h2final6 136 158 IPR013087 -
Vimu5g00729 254 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Vimu5g00729 254 SUPERFAMILY beta-beta-alpha zinc fingers 136 220 IPR036236 -
Vimu5g00729 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00729 Vimu-Chr5 8772916 8773878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00729 135 254 C2H2 Transcription Factor Family AT4G35280 47.727 1.54e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g00729 zf-C2H2_6 9.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00729 - - vun:114195192 238.424