Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00728 ATGAAGGAGGATTCTGACTGCGCTGAAGAAGCGGAGAAGAAGCGGAGAAGAACGATAGTGTCAATGGAAGAGGAGGGGTGGAAAGGGAAGAGATCCTCCGATCCACGTCCATGGACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGCCACCCTGAGCATCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCATCAACAACAGGAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAGGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAACAACAGAGAGAAAGGGAAAGAGAAAGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGTTCGAGTTGCAACAGGGTGATCGGATCGCACCAGGCTCTTGGAGGGCACTGTGCGAGTCACAAGAACGTGAAAGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAAGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCTGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCAGAGTTTACTAAAGTTGAAGGACTAAATTGTACCTTAGTTTGA 732 0.5082 MKEDSDCAEEAEKKRRRTIVSMEEEGWKGKRSSDPRPWTECGKKFWSWKALFGHMRCHPEHQWRGINPPPNARRHHHQQQEQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNNNREKGKEKEEEVQQWQFECSSCNRVIGSHQALGGHCASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNMNMSGDGHKCSICLRVFSTRQALGGHKRCHWENLKGENLLLLDSPEFTKVEGLNCTLV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00728 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Vimu5g00728 243 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Vimu5g00728 243 Pfam C2H2-type zinc finger 193 217 - -
Vimu5g00728 243 Pfam C2H2-type zinc finger 131 154 - -
Vimu5g00728 243 Pfam C2H2-type zinc finger 39 59 - -
Vimu5g00728 243 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Vimu5g00728 243 Gene3D Classic Zinc Finger 128 215 - -
Vimu5g00728 243 MobiDBLite consensus disorder prediction 1 34 - -
Vimu5g00728 243 MobiDBLite consensus disorder prediction 62 93 - -
Vimu5g00728 243 SUPERFAMILY beta-beta-alpha zinc fingers 191 217 IPR036236 -
Vimu5g00728 243 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 221 - -
Vimu5g00728 243 SMART c2h2final6 39 58 IPR013087 -
Vimu5g00728 243 SMART c2h2final6 193 215 IPR013087 -
Vimu5g00728 243 SMART c2h2final6 131 153 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00728 Vimu-Chr5 8771026 8771757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00728 36 217 C2H2 Transcription Factor Family AT4G35280 54.645 4.17e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g00728 zf-C2H2_6 3.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00728 - - vra:106766136 378.252