Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00727 ATGAAGGAGGATTCTGACTGCGCTGAAGAAGCGGAGAAGAAGCGGAGAAGAACGATAGTGTCAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCTGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCATCAACAACAGGAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAGGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAACAACAGAGAGAAAGGGAAAGAGAAAGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGTTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAAGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCTAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTTGATTTGAGGTTGGGACTCTAG 750 0.5227 MKEDSDCAEEAEKKRRRTIVSMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHHQQQEQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNNNREKGKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRLGL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00727 249 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Vimu5g00727 249 Pfam C2H2-type zinc finger 37 60 - -
Vimu5g00727 249 Pfam C2H2-type zinc finger 193 217 - -
Vimu5g00727 249 Pfam C2H2-type zinc finger 131 154 - -
Vimu5g00727 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vimu5g00727 249 MobiDBLite consensus disorder prediction 62 93 - -
Vimu5g00727 249 SUPERFAMILY beta-beta-alpha zinc fingers 35 153 IPR036236 -
Vimu5g00727 249 Gene3D Classic Zinc Finger 128 215 - -
Vimu5g00727 249 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vimu5g00727 249 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Vimu5g00727 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 220 IPR013087 -
Vimu5g00727 249 SMART c2h2final6 36 58 IPR013087 -
Vimu5g00727 249 SMART c2h2final6 193 215 IPR013087 -
Vimu5g00727 249 SMART c2h2final6 131 153 IPR013087 -
Vimu5g00727 249 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 242 - -
Vimu5g00727 249 SUPERFAMILY beta-beta-alpha zinc fingers 191 219 IPR036236 -
Vimu5g00727 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00727 Vimu-Chr5 8764778 8765527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00727 36 249 C2H2 Transcription Factor Family AT4G35280 51.982 1.42e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g00727 zf-C2H2_6 9.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00727 - - vun:114195192 397.512