Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00726 ATGAAGGAGGATTCTGACTGCGCTGAAGAAGCGGAGAAGAAGCGGAGAAGAACGATAGTGTCAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCATCAACAACAGGAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAGGAGGTTGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAACAACAGAGAGAAAGGGAAAGAGAAAGAGGAAGAGGTTCAGCACTGGCAGTTCGAGTGTTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAAGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCTAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTCGATTTGAGAACAACTGTGTTTAGTCACTCTCAGACAGTTGTGGTATGTGGTAACTGTCAGACTGTGTTGTGCCAACCAACCGGTGGAAGAGCTAGGTTAACTGAAGGGTGCTCATTTAGGAAGAAGGGAGATTGA 864 0.5139 MKEDSDCAEEAEKKRRRTIVSMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHHQQQEQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNNNREKGKEKEEEVQHWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRTTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00726 287 Gene3D - 213 287 IPR023407 -
Vimu5g00726 287 SUPERFAMILY beta-beta-alpha zinc fingers 191 219 IPR036236 -
Vimu5g00726 287 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Vimu5g00726 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vimu5g00726 287 MobiDBLite consensus disorder prediction 62 93 - -
Vimu5g00726 287 SUPERFAMILY beta-beta-alpha zinc fingers 35 153 IPR036236 -
Vimu5g00726 287 Gene3D Classic Zinc Finger 128 212 - -
Vimu5g00726 287 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vimu5g00726 287 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Vimu5g00726 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 220 IPR013087 -
Vimu5g00726 287 Pfam Ribosomal protein S27 246 285 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vimu5g00726 287 Pfam C2H2-type zinc finger 37 60 - -
Vimu5g00726 287 Pfam C2H2-type zinc finger 131 154 - -
Vimu5g00726 287 Pfam C2H2-type zinc finger 193 217 - -
Vimu5g00726 287 SUPERFAMILY Zn-binding ribosomal proteins 247 285 IPR011332 GO:0006412
Vimu5g00726 287 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 247 - -
Vimu5g00726 287 SMART c2h2final6 36 58 IPR013087 -
Vimu5g00726 287 SMART c2h2final6 193 215 IPR013087 -
Vimu5g00726 287 SMART c2h2final6 131 153 IPR013087 -
Vimu5g00726 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00726 Vimu-Chr5 8752491 8754599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00726 36 248 C2H2 Transcription Factor Family AT4G35280 53.271 7.75e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g00726 Ribosomal_S27e 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00726 - - vra:106766136 400.979