Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00716 ATGTGGCAGGCCCCTTTCTCCCAAGAGAATGAAGGTGCTGTAAATTCCTCCCGTGGTGGAATGTTGGATGTTGGTGCTTCTTACAGGTACGATTTGGAATTTTACGCAAGTAGAAAGAAGCATTGGCTGATGGAAGATGAAGGCGTTGCAATTTCTGTGATTTTGGGAGTGATTTGCAGGCGCAAGAACGAAAATAGGTTGGTGGTTCTGGAATGGACGAACACGTGGGTTAGGGTCTCTGTTTTCGCTTTTCGCGATTGTGGTTTCCTCTTTGCAGGTGGTGATGGACGAAGCTTCGTGACGGTGCGTGAGGAAAGCTTTGCGTTTCTGGGTTGGTTATGGAGGAGATCACGACGCGATTTGAGTGACAAGATGTTGACGCAGCGACGTTGTGTTGGCGTTAGGTGGTTAAGGCGTTGTGGTGGCCGATTTTGTTTCTGTTCTGGAGCAGACCATCTTCTTGTTAAGCAAGAAAGATACGGTGATGAAATACGGTCGTGGATCACACGCACCCAACAGAGGTACCAAAGCCGCTTCACTGTTATCAACATAATGGTGGTGCTTCCCGTGGTGAAGCTGGCAACACTCGCCCTCAAAACCGCGTGTAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCTAAGTTCTGCAGCTTCATAATCGCCATTGCCCAGGCCAATCACAGATTGACGACGAGAGTGCAGAGAAGAATCTACGGTCGTGCCACCGATGTTGCAATCCGTCCTTTGAACGAGGAGAAGGTTGTGCAAGCTGCTGCAGATTTGCTTGGAGAACTCTTTTGTTACCTGAGTGCAGGCATTATTAGCCGTGAGTTGTGTCGTTGCACTGCTGTAAATAAGGAGGCAGTGGAAAAGGTTGAAGACAGTCACTTGAAGGAAGAGAGTGACAAAGGAAATTCAGCAATACAGACGAGGAATGAAGAGTTGGCTAGAGAAATGGAACTTCTTGCACACAAACTTGAAAAGCTGGAACAACTTTCTAGAGGCCGAGGATTATTTGGCACTCTTAACTTCGGACCCACTCATGAAGGTATGATGAGAGAAAGTTCCAAGGGCAAGTTTGGATCCTCTTCTATTCAATCTATGAAGGAGAAGGAAAAACACCTGGTGGATAAAATTCAAGGGATTTTCAGCAATCTTCAGTGTGCAAGAAAAGAGGGCAGGGGTAGTGACATTGTGATATTTGAGGAGCAGATGCATCAGCTTCTCCGCGAGTGGAAGGCGGAACTGGAGTCTCCAGCCACCTCCTTAGCTGAGCGGCTCCTGGCAGACTTTCAGTGGAAGGGATACATGGACGAATCGAACATAACTGGAATGAGAGGGATCTAG 1359 0.4798 MWQAPFSQENEGAVNSSRGGMLDVGASYRYDLEFYASRKKHWLMEDEGVAISVILGVICRRKNENRLVVLEWTNTWVRVSVFAFRDCGFLFAGGDGRSFVTVREESFAFLGWLWRRSRRDLSDKMLTQRRCVGVRWLRRCGGRFCFCSGADHLLVKQERYGDEIRSWITRTQQRYQSRFTVINIMVVLPVVKLATLALKTACKPIANRLKKEAGYHPKFCSFIIAIAQANHRLTTRVQRRIYGRATDVAIRPLNEEKVVQAAADLLGELFCYLSAGIISRELCRCTAVNKEAVEKVEDSHLKEESDKGNSAIQTRNEELAREMELLAHKLEKLEQLSRGRGLFGTLNFGPTHEGMMRESSKGKFGSSSIQSMKEKEKHLVDKIQGIFSNLQCARKEGRGSDIVIFEEQMHQLLREWKAELESPATSLAERLLADFQWKGYMDESNITGMRGI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00716 452 PANTHER OPTIC ATROPHY 3 PROTEIN OPA3 185 363 IPR010754 -
Vimu5g00716 452 Pfam Optic atrophy 3 protein (OPA3) 191 299 IPR010754 -
Vimu5g00716 452 Coils Coil 309 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00716 Vimu-Chr5 8675005 8683572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00716 355 429 VOZ-9 Transcription Factor Family AT1G28520 46.753 1.45e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00716 K23166 - gmx:100527103 208.379