Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00708 ATGAAGAGGTCTCCATCATCTTCTTGTTCATCATCTTCTGAAACTGCCATTGCTGAACAAGGAAAAAGAAGACCTAATTATCCAAGGAGGAACAACTTGAAGTCACAGAAATGCAAGCAGAATCAAACCACTTGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGACATAGGTGGACAGGTAGGTTTGAAGCTCACCTATGGGATAAAACCTCTTGGAACAACATTCAGAGCAAGAAGGGTAAACAAGGAGCATACGATAACGAAGAAGCTGCAGCCCGTACTTATGATCTTGCAGCCCTGAAGTACTGGGGAAAAGACGCAGTTTTGAATTTTCCGATAGGAAATTATACAAAGGATCTTGAGGAAATTGAGAAAGTTTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATATCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCTCGCATAGGAAGAGTGTGTGGAAACAAGTACCTTTATTTGGGAACATACATAGTTGCAGTATGCATCAATTTCTGGTCTGACATTACAATATGTGGCTGTGGATCACATAAAAATAGCAGCATAGGAAAGTTACAGCTGCAAATACCCACCAACATGGCACGTGCATTACCCTCTCTTCCTTTCTTCATGGGTCCAGTTTATTCAAAGTCACCACCACACCTTTCTTGTCCACAATCTCTTGCCAACATGTCGGTCAAAAAAACTCAAGAGGAGGCAGCTGTGGCATATGACTTAGCAGCAATAGAGTACAGAGGACTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAAAGAAAAAGGACCAAACTCAAGAAACAGTAGCACAAACAGAAACAGTTCCAAACTCCTCAGACTCAGAAGAAGCAGAAGTAGAACAACAACAGAACACAACTACACCAACCCCTTCTGAGAATCTGCACATGGCAGCAGTGCAACACAACCAAGTTCCACACACACCCCTTGTGTATCCTAGGGAAGAGTCATCATCACTGGTCACTATTATGGATCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTACACTGGGGTGTCTCAGTTTCAAGATCCAGACTTTGCTTTCAGCAAAGCTGAGGATTTGGTAGCCATGTTTGGTGGTGGTTCAGGGTTTGAGGAGGACATTGATTTTCTGTTGAGCACAGAGCCTTGTTGTGAGACTGGGAGTGATACCAATATGAGAGCAGTTTTTGATAGCATTGAATGTGGTGAGGATGGTGGAAACATGGTGCATGGGGATAACAAGCAGAAGGAGATACTATCTTTTGCATCTTCTTCTCCATCATCTACAACAACTTCAGTTTCTTGTAACTATGCTTAG 1401 0.4261 MKRSPSSSCSSSSETAIAEQGKRRPNYPRRNNLKSQKCKQNQTTCRRSSIYRGVTRHRWTGRFEAHLWDKTSWNNIQSKKGKQGAYDNEEAAARTYDLAALKYWGKDAVLNFPIGNYTKDLEEIEKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYIVAVCINFWSDITICGCGSHKNSSIGKLQLQIPTNMARALPSLPFFMGPVYSKSPPHLSCPQSLANMSVKKTQEEAAVAYDLAAIEYRGLNAVTNFDISNYIDKKKKDQTQETVAQTETVPNSSDSEEAEVEQQQNTTTPTPSENLHMAAVQHNQVPHTPLVYPREESSSLVTIMDHVLEQDLPWSFMYTGVSQFQDPDFAFSKAEDLVAMFGGGSGFEEDIDFLLSTEPCCETGSDTNMRAVFDSIECGEDGGNMVHGDNKQKEILSFASSSPSSTTTSVSCNYA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00708 466 Gene3D AP2/ERF domain 251 279 IPR036955 GO:0003700|GO:0006355
Vimu5g00708 466 Gene3D AP2/ERF domain 50 115 IPR036955 GO:0003700|GO:0006355
Vimu5g00708 466 Gene3D AP2/ERF domain 148 184 IPR036955 GO:0003700|GO:0006355
Vimu5g00708 466 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 SUPERFAMILY DNA-binding domain 49 114 IPR016177 GO:0003677
Vimu5g00708 466 CDD AP2 148 279 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 334 - -
Vimu5g00708 466 MobiDBLite consensus disorder prediction 1 39 - -
Vimu5g00708 466 CDD AP2 49 114 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 MobiDBLite consensus disorder prediction 1 19 - -
Vimu5g00708 466 FunFam AP2-like ethylene-responsive transcription factor 49 115 - -
Vimu5g00708 466 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 SUPERFAMILY DNA-binding domain 251 279 IPR016177 GO:0003677
Vimu5g00708 466 ProSiteProfiles AP2/ERF domain profile. 149 277 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 SMART rav1_2 149 283 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Vimu5g00708 466 MobiDBLite consensus disorder prediction 287 323 - -
Vimu5g00708 466 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00708 Vimu-Chr5 8481219 8487533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00708 37 180 AP2-EREBP Transcription Factor Family AT5G65510 63.265 1.02e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu5g00708 AP2 1.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00708 - - vra:106754673 413.69