Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00706 ATGTCTCGGCAATCGGTCCTCCTATTCCTATGTCTAGGTAATATTGCTCCCGAGAGAATTTCCCCGAGTCTAGATTTCCCCCCAGAGCATCATTCCTTGTTTGAATCAGTTGTTGATACTCCAACTAATAGTGATGCCATCAGCTCAATTAAATATATCCCTTCCAGAAGGCATGGTCAAAAAACTCAAAATAGAGCAGAGCCACCAAGACGAAGGGGTAAAAAATCAGCTTCGGTGTTACCTGTTGTTCCTTATGCAAGGATTGATAGTGCACCTATCTCCGTAGATAAGATTTTTGTGCATGATGTTACTAGGCCCAAAGGTCATGATTTTCTCGAGAGTGAGGATAAGAATTCAGCTGTTGGACATGTAATGACTAAAGCTGCAATATGTGGCTCCAATAACCAGAATTTGGAGGATAAATCTCTTTGGCTTTTCAGAGGAACAGAAGAGATAATGCCGGAAATTTCCATCATTGCTTCTAAAGGATTAGCACAAGTCATGTTTTCCACTATCATGAATGTTGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTGAAAATGTTGAAACTGAAAAAGATGAGGAACAAAATATGAAAGTAAACTTGGCTGAAAGAGAAGTAAATAACCAAGATGGTGATGCTTATAGGAAACCACTTGTGGGCATGCTGTTTGAATCTGAAGATTTTGCAAAATCATTTTATGATGCATATGCAAGAGATGTAGGATTTAGCACACATGTTGGTCAATTCAGCCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCTTGTTCCAGAGAGGTATTTAAAAGGAAGAACATAGTAAGTTGCAATGCAATGCTTAGGGTAGAGAGAAAAGATGCAAACTGGATAGTGACAAAATTTGTTGAGGACCACAACCATTCCCTTGCTTCCTCTAGAAAGGTGCAGAACCGTCAACCCAGTAGACATTCTGTAGGTGCTGCTAGGAATGTTATAGCAACATTTGATGCCCGTAATGAATCTTGTGCTTCCTTGAATGGAAATCATTCAGAGCCCATTAGTTCTGTTAGGAACTCCTTTCCAGCAGAACAATGTCATCCAATGAGAAGCATCGGGTCACTTACCTATGCAAGATCTTCTCAAAAGAGGACACTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGTCAAAACCCTGGCTTCTATTATGCAATACAACTAGATGATGAAAACCGCATGACCAATGCATTCTGGGCGGATGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCTGTAATTTTTGACACAATGTATAGACCAAATCAATACCAAATCCCATTTGCTCCATTTACGGGATTCAATCACCACGGCCAAATGGTTTTATTTGGTTGTTCATTACTTCTAGACGAATCGGAGTCTTCCTTTACATGGCTATTCAAGACGTGGCTATCTGCTATGAATGATCGACCACCTGTTTCCATAACTACAGACCAAGATAGAGCCATACAAGCAGCAGTTTCTCATGTGTTCCCGGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTAAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCACTCTATGGGGATCTATATGGCTGTATCAATTTTTCCGAGACTACTGAGGATTTTGAATCAACATGGAAGTCTCTTCTGGATAAATATGATCTCCAAAAAAATGATTGGCTTCAGGCAGTATATAATGCTCGTAAACAATGGGCCCCTGTTTACTTTCGTGATACTTTCTTTGCTGCTATTACTTCAAACCACGGGGTAAACTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAGGCAGTATGAAATATCACTTGAACATTCATTGGAAAAAGAAGTAGAAGCAGATTATGAGACTATTTGTAACACACCTGTCCTGAGGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAACAAGATTTTTGCAAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCATATACTGCAAGTAATGTTGACAATGATGGTGTTATCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCACATTAAATATGTCTGAAATGAAGGCAAACTGCAGCTGTCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATGTATTGACTGTTTTCACTGTAACAAATGTCCTTACCCTTCCATCACACTACATTTTAAAGCGATGGACAAGGAATGCAAAATCTGGTTTTGGAACTGATGAAAAAACAACAGGTCCACTTAACATTGAAAATCTCACTATACGTTTTAATAGTTTATGTCAAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATTTCCGTTGAGACTTATAATGTAGCAATGAATGCTTTGAGAGAGGGTGCTAAAAGGGTAGGTATTGTGAAGAAAAATATTGCAAAAGTCAAACCTACAAAAACTCAGGGTAATGGATGCTGTCCGGAAGACAATAGCAAGAAGAGCCCCTCATCAATTTCGGATGTTATCCCATCACTGTGGCCTTGGCAAGATTCAGTGTCAAATCACTTGAATCATAGTGGCCTTGGGCTTCCTGTTACTGATCTGAATCATCCTACTATGGCTCCTGTTTCTATTCACCAGGATGGTGGCCCTCCAGATAACTCTGTTGTCCTCATGTGTTTCAAGTCTATGACTTGGATCATTGAAAATAAGAATTCAAGCCAATCTAGTAAAATTGCAGTCATCAACATGAAGCTGCAAGATTATGGTAAGAGCCCTTTAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGGTAACTTTGGAGCCTATGTTGAGATCAATGACTTACATTAGTCAACAGTTAAATGCACCAGTCAATAGAGTTGCTGTCATTAATCTGAGGACATGTTTTGTTGTATCAGTTGACAGGACTATTGCATCCTGTTTGGTGGGAGAAGGCTCCCTTGGAAGCTTACTAACTGTGTTCTTTGTCACCAAGAATAATAATAGAGACTATACAGTGCTTTTCTGTGTCAGAGATTCTGGGTTTCTTGTTCCAAGAAACCTAACAGAACATGCTACAAGTCCAGTGGTTTTTTATGGGAATGTGTTAGATAAGCACATTGAGAGAAAAGTTGATGTCGATATGACAAGGAGGAGGTCAGTTGCGTGGTCTCTAGAATTCTACATCATCCAGCTCCAGGATACGAAGACAACGACTGGGCAAACTGAGGTAAAATTCCAAGTTTCTAGGGATACTCTCGGCTCCATGCTGAGATCTATGGCCTACATCCGGGAGCAGCTCTAG 3375 0.4006 MSRQSVLLFLCLGNIAPERISPSLDFPPEHHSLFESVVDTPTNSDAISSIKYIPSRRHGQKTQNRAEPPRRRGKKSASVLPVVPYARIDSAPISVDKIFVHDVTRPKGHDFLESEDKNSAVGHVMTKAAICGSNNQNLEDKSLWLFRGTEEIMPEISIIASKGLAQVMFSTIMNVEAVDEGENSDRPASENVETEKDEEQNMKVNLAEREVNNQDGDAYRKPLVGMLFESEDFAKSFYDAYARDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDANWIVTKFVEDHNHSLASSRKVQNRQPSRHSVGAARNVIATFDARNESCASLNGNHSEPISSVRNSFPAEQCHPMRSIGSLTYARSSQKRTLGRDAQNLLNYFKKMQGQNPGFYYAIQLDDENRMTNAFWADARSRTAYNYFGDAVIFDTMYRPNQYQIPFAPFTGFNHHGQMVLFGCSLLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVSHVFPETRHCICKWHILREGQERLAHIYLAHPSLYGDLYGCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRDTFFAAITSNHGVNSFFDGYVNQQTTIPLFFRQYEISLEHSLEKEVEADYETICNTPVLRTPSPMEQQAANMYTNKIFAKFQEELVETFAYTASNVDNDGVISKYRVAKYEHDHKAYMVTLNMSEMKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGFGTDEKTTGPLNIENLTIRFNSLCQEAIKLAEEGAISVETYNVAMNALREGAKRVGIVKKNIAKVKPTKTQGNGCCPEDNSKKSPSSISDVIPSLWPWQDSVSNHLNHSGLGLPVTDLNHPTMAPVSIHQDGGPPDNSVVLMCFKSMTWIIENKNSSQSSKIAVINMKLQDYGKSPLGETEVQFRVTRVTLEPMLRSMTYISQQLNAPVNRVAVINLRTCFVVSVDRTIASCLVGEGSLGSLLTVFFVTKNNNRDYTVLFCVRDSGFLVPRNLTEHATSPVVFYGNVLDKHIERKVDVDMTRRRSVAWSLEFYIIQLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIREQL 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00706 1124 Pfam FAR1 DNA-binding domain 236 310 IPR004330 -
Vimu5g00706 1124 Pfam MULE transposase domain 439 531 IPR018289 -
Vimu5g00706 1124 SMART 26again6 727 754 IPR006564 GO:0008270
Vimu5g00706 1124 Pfam SWIM zinc finger 718 750 IPR007527 GO:0008270
Vimu5g00706 1124 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 208 827 IPR031052 GO:0006355
Vimu5g00706 1124 MobiDBLite consensus disorder prediction 179 200 - -
Vimu5g00706 1124 MobiDBLite consensus disorder prediction 60 74 - -
Vimu5g00706 1124 Coils Coil 189 209 - -
Vimu5g00706 1124 ProSiteProfiles Zinc finger SWIM-type profile. 716 752 IPR007527 GO:0008270
Vimu5g00706 1124 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00706 Vimu-Chr5 8445180 8454575 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g00706 MULE 9.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00706 - - gmx:100789242 1491.48