Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00702 ATGGGGTATGAAGCCAGAACACTCTCAGATGAGTATGAAGTCTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACAAGAAAATCAAGCAGTGACACCAAAACCCATGTGGCCATCAAAACTTTGAGAAGATCAGGCACTGCCTCAAACCCTTCTGGGTTTCCAAGACCAAAGGGTGCAGAGAAGAGCTCAGCAGCTATGATTGGGTTCCCATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGGGAACTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGAGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGTGAGGAGGGATTCTCCTCTTAAGATCATGGACTTTGGTTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGGGAACTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAGCAACTAATTTCAGATCTTCTGACAGTTGATCCTAGTAGGAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAGGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCTTTGGTAGGAACACATGATCTCACAGAAGAGGAAATTGAAAACCTCAGGATAAATTTTAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTAAGTGAGTTTGAAGAGGTGCTGAAAGCAATGAATAGGCCATCACTGGTCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATTCTATGTGGCTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTTCGTTTGTGCTTCCAGATGTACGACACAGATCGATCAGGGTGCATCACCAAGGAAGAAGTCGCATCCATGCTCAGAGCTTTACCAGAAGAGTGTTTGCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTCTTCAAGACCTTGTTCTCTCTTCTCTAAGACCACAATCATAG 1491 0.4413 MGYEARTLSDEYEVSDVLGRGGFSVVRKGTRKSSSDTKTHVAIKTLRRSGTASNPSGFPRPKGAEKSSAAMIGFPWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGGNFSFYEKTWKGITQSAKQLISDLLTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTEEEIENLRINFKKICVSGDNATLSEFEEVLKAMNRPSLVPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDLVLSSLRPQS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00702 496 ProSiteProfiles Protein kinase domain profile. 12 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00702 496 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Vimu5g00702 496 CDD EFh 378 437 IPR002048 GO:0005509
Vimu5g00702 496 CDD STKc_CAMK 12 276 - -
Vimu5g00702 496 Gene3D - 295 489 - -
Vimu5g00702 496 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Vimu5g00702 496 Gene3D Phosphorylase Kinase; domain 1 4 60 - -
Vimu5g00702 496 Pfam EF hand 380 395 IPR002048 GO:0005509
Vimu5g00702 496 CDD EFh 412 479 IPR002048 GO:0005509
Vimu5g00702 496 SUPERFAMILY Protein kinase-like (PK-like) 6 294 IPR011009 -
Vimu5g00702 496 SUPERFAMILY EF-hand 321 486 IPR011992 -
Vimu5g00702 496 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vimu5g00702 496 Gene3D Transferase(Phosphotransferase) domain 1 236 294 - -
Vimu5g00702 496 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vimu5g00702 496 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Vimu5g00702 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vimu5g00702 496 PRINTS Recoverin family signature 403 422 - -
Vimu5g00702 496 PRINTS Recoverin family signature 379 400 - -
Vimu5g00702 496 PRINTS Recoverin family signature 469 489 - -
Vimu5g00702 496 PRINTS Recoverin family signature 333 352 - -
Vimu5g00702 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 458 - -
Vimu5g00702 496 SMART efh_1 453 481 IPR002048 GO:0005509
Vimu5g00702 496 SMART efh_1 375 403 IPR002048 GO:0005509
Vimu5g00702 496 SMART efh_1 411 439 IPR002048 GO:0005509
Vimu5g00702 496 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Vimu5g00702 496 Gene3D Transferase(Phosphotransferase) domain 1 131 235 - -
Vimu5g00702 496 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 320 489 - -
Vimu5g00702 496 Gene3D Phosphorylase Kinase; domain 1 65 130 - -
Vimu5g00702 496 SMART serkin_6 12 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00702 496 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 73 130 - -
Vimu5g00702 496 ProSiteProfiles EF-hand calcium-binding domain profile. 378 406 IPR002048 GO:0005509
Vimu5g00702 496 Pfam Protein kinase domain 87 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00702 496 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Vimu5g00702 496 Pfam EF-hand domain pair 410 479 IPR002048 GO:0005509
Vimu5g00702 496 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00702 Vimu-Chr5 8386618 8392282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00702 85 482 EF-hand Containing Proteins AT3G10660 35.011 3.18e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vimu5g00702 Pkinase 2.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00702 K13412 - gmx:732616 903.279