Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00700 ATGGGGACCCAAACGATGGGATCTCAAGGTGGTGGTAAAGACAGTAATGGAAAACAGTCACAAGTCCAGCCCCTGGTGCGGCAAAACTCAATGTACAGCCTCACACTGGATGAGGTTCAGAATCAATTGGGTGATCTAGGGAAGCCGCTTAGTAGTATGAACATTGATGAGCTTCTGAAAAATGTGTGGACTGTTGAGGCAGGCCAGACAGCTGGTATGGACAATGAAAGCGCGGCACAAGCTGGTCAAGCTGCTCTCCAGCGTCAGGCTAGTCTGTCACTGAATGGTGCTCTGAGCAAGAAGACGGTGGATGAGGTTTGGAGAGATATCCAACAAAACAAAGCCAATGAGGAGAAGATGATCTGTGACAGACAGCCTACTTTGGGAGAAATGACATTGGAGGACTTCTTGGTGAAAGCAGGAGTTGTTACAGAAACATCTTCTAACCCAAAGAATGCTGGTACTGTATCCACACCAGTACCAGTACCAGTAGCAGTACCAGTACCAGTGCCAGTACCGATCGATTCAAATGTGGCAGTACCACCACAGTTTCCTTCACAAGGACAGTGGATACAATATCCACCAGTGCAATATCAGCATCCACAGCAAAGTTTGATGCAGATTTATATGCCTGGTCAGGGTATGGCACAACCAATACACATGGGGCCTGGAGCTTCATTGGATGTTTCGTTTGCAGATGGCCAGGTTGCAATGCCATCTCCTATGATGGGAACAATGTCGGATTCACATACTCCTGGAAGAAAAAGGACCACTCCTGAGGACATGATGGAGAAAACTGTTGAGAGGAGACAGAAAAGGATGATAAAAAATCGTGAATCTGCTGCTCGTTCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGAATAAAGTCTCCCGTCTAGAAGAGGAAAATGAAATGCTGAGGAAACGACAGGAGATAGAGAAGATGTTGCCAAGTACACCACCTCCTGAGCCTAAGTATCAACTTCGCCGAATAGGATCAGCTCCTTTCTGA 1020 0.4657 MGTQTMGSQGGGKDSNGKQSQVQPLVRQNSMYSLTLDEVQNQLGDLGKPLSSMNIDELLKNVWTVEAGQTAGMDNESAAQAGQAALQRQASLSLNGALSKKTVDEVWRDIQQNKANEEKMICDRQPTLGEMTLEDFLVKAGVVTETSSNPKNAGTVSTPVPVPVAVPVPVPVPIDSNVAVPPQFPSQGQWIQYPPVQYQHPQQSLMQIYMPGQGMAQPIHMGPGASLDVSFADGQVAMPSPMMGTMSDSHTPGRKRTTPEDMMEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENEMLRKRQEIEKMLPSTPPPEPKYQLRRIGSAPF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00700 339 Coils Coil 285 312 - -
Vimu5g00700 339 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 267 319 - -
Vimu5g00700 339 CDD bZIP_plant_BZIP46 269 314 - -
Vimu5g00700 339 SMART brlzneu 265 333 IPR004827 GO:0003700|GO:0006355
Vimu5g00700 339 Gene3D - 267 320 - -
Vimu5g00700 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 267 312 IPR004827 GO:0003700|GO:0006355
Vimu5g00700 339 MobiDBLite consensus disorder prediction 241 339 - -
Vimu5g00700 339 MobiDBLite consensus disorder prediction 1 26 - -
Vimu5g00700 339 Pfam bZIP transcription factor 269 313 IPR004827 GO:0003700|GO:0006355
Vimu5g00700 339 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 338 IPR043452 GO:0003700|GO:0045893
Vimu5g00700 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 272 287 IPR004827 GO:0003700|GO:0006355
Vimu5g00700 339 MobiDBLite consensus disorder prediction 253 317 - -
Vimu5g00700 339 SUPERFAMILY Leucine zipper domain 269 314 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00700 Vimu-Chr5 8349723 8352862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00700 18 339 bZIP Transcription Factor Family AT3G56850 54.128 5.02e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g00700 bZIP_1 1.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00700 K14432 - gmx:100101875 489.189