Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00682 ATGTTTTCTCCACCAATGTCCCTTCTCTTCCTCTTTTTCCTCTCCCTCTTTCTTCCATTACTCTTAGCTCAAACTCCTTCACCATCTCCAACACATGCTACTCATGCTCCTTCTCCATCACCATCTCCAACGCATGCTTCTTCTCCATCACCTTCTCCATCACCATCTCCAACTCATGCTCCTTCTCCTTCTCCATCATCATCAACACATGCTCCTTCTACTTCTCCTTCTCCATCACCCTCTCTAACAAGTACTCCACCACCACCTCTTCCACCAACTTCACCCTCTTCAGCATGCAAGGCCACATTATATCCAAAACTCTGCCGTTCCCTTTTCGCATCCATTCGATCCTCACCTTCTGATCCTTACAACTTAGGAAAATTCTCCATCAAACAAAGCCTCAAGCAAGCCAAAAAACTGGCCAAAGTCTTCGCGGATTTCCTCAAAAAGCACCAATCTTCTTCTCTCAGCAGCGCAGAGATTGCAGCCCTAGAAGACTGCAGTGAGCTGAGCCAGCTGAGTGTTGGCTACCTGGAGTCAGTTTCAGAAGAGCTGAAATCTGCAGACTCGTCCAACACAGAGTTAGTTGAAAAGATCGAAACATATCTCAGTGCTGTGGCCACTAACCATTACACTTGCTATGATGGGTTGGTGGTGATCAAGAGCAACATTGTCAACACTCTTGCTGTGCCTCTCAACAATGTCACACAACTCTATAGTGTCTCTCTTGGGTTGGTCACGCAGGCTCTGAAGAAGAATCTGAAGAAGCATAAGACTCGCAAACATGGTCTTCCCACCCAGAATAACAAGGTTAGACAGCCACTGAAAAAGCTCATTAAGCTTCTTCACACAAAGTACAGTTGCGAAGCATCATCAAATTGCAGCACTAGAAGTGAAAGGATTCTTAAAGAAAGTGAGAGCAAGGGAATTCTGCTTAAAGAGTTTGTCATTGTGAACCTTAATGGCAAAGACAACTTCACCTCCATTGGAGAGGCTATTGCTGCAGCACCAGATAACTTAAGGCCAGAAGATGGCTATTTCCTTATCTATGCAAAAGAAGGATCCTATGAGGAATATGTCACTGTTCCCTTTCAGAAGAAGAATATCTTGCTTATTGGTGATGGCATCAACAAGACTTGCATCACAGGAAACCATAGTGTTGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTTTCTGGAGAAAGATTCGTTGCTGTGGATGTTACATTCAGAAACACTGCTGGCCCTGAGAAGCACCAAGCAGTGGCTGTGAGGAACAATGCAGACCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTCCACTCTCTCAGGCAATTCTACAGGGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGAAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCATTGCCAAAGCAGAAGAATGCTGTCACAGCACAAGGGAGAACTGACCCCAATCAAAACACAGGAATTTCAATCCAGAATTGCAGGATTGAGGCTGCACCTGACTTGGCTGCAGACTTGAACTCAACTCAAAATTACTTGGGCAGGCCATGGAAACTGTACTCAAGGACAGTATACATGCAGTCCTATATTGGAGAACTTATTCAATCCGTTGGATGGTTAGAATGGAATGGAACAAATGGATTAGACACCCTCTTTTATGGTGAGTTCAATAACTTTGGACCTGGTTCTGATACAAGCAAGAGGGTACAATGGAATGGTTACAGTATACTGAGCCCCACACAAGCTTGGAACTTTACTGTGTACAATTTTACCTTGGGAAATACATGGCTTCCAGATACTGATATACCCTACTCTGAAGGGCTTTAG 1887 0.4425 MFSPPMSLLFLFFLSLFLPLLLAQTPSPSPTHATHAPSPSPSPTHASSPSPSPSPSPTHAPSPSPSSSTHAPSTSPSPSPSLTSTPPPPLPPTSPSSACKATLYPKLCRSLFASIRSSPSDPYNLGKFSIKQSLKQAKKLAKVFADFLKKHQSSSLSSAEIAALEDCSELSQLSVGYLESVSEELKSADSSNTELVEKIETYLSAVATNHYTCYDGLVVIKSNIVNTLAVPLNNVTQLYSVSLGLVTQALKKNLKKHKTRKHGLPTQNNKVRQPLKKLIKLLHTKYSCEASSNCSTRSERILKESESKGILLKEFVIVNLNGKDNFTSIGEAIAAAPDNLRPEDGYFLIYAKEGSYEEYVTVPFQKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPKQKNAVTAQGRTDPNQNTGISIQNCRIEAAPDLAADLNSTQNYLGRPWKLYSRTVYMQSYIGELIQSVGWLEWNGTNGLDTLFYGEFNNFGPGSDTSKRVQWNGYSILSPTQAWNFTVYNFTLGNTWLPDTDIPYSEGL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00682 628 CDD PMEI-like_3 98 247 - -
Vimu5g00682 628 MobiDBLite consensus disorder prediction 63 78 - -
Vimu5g00682 628 SUPERFAMILY Pectin lyase-like 313 627 IPR011050 -
Vimu5g00682 628 ProSitePatterns Pectinesterase signature 2. 462 471 IPR033131 -
Vimu5g00682 628 Coils Coil 178 198 - -
Vimu5g00682 628 SMART PMEI_2 90 245 IPR006501 GO:0004857
Vimu5g00682 628 NCBIfam pectinesterase inhibitor domain 97 248 IPR006501 GO:0004857
Vimu5g00682 628 MobiDBLite consensus disorder prediction 32 62 - -
Vimu5g00682 628 Pfam Pectinesterase 316 613 IPR000070 GO:0030599|GO:0042545
Vimu5g00682 628 MobiDBLite consensus disorder prediction 79 95 - -
Vimu5g00682 628 Gene3D - 311 628 IPR012334 -
Vimu5g00682 628 PANTHER PECTINESTERASE 95 618 - -
Vimu5g00682 628 Pfam Plant invertase/pectin methylesterase inhibitor 96 244 IPR006501 GO:0004857
Vimu5g00682 628 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 248 IPR035513 -
Vimu5g00682 628 Gene3D Invertase/pectin methylesterase inhibitor family protein 95 249 IPR035513 -
Vimu5g00682 628 MobiDBLite consensus disorder prediction 27 97 - -
Vimu5g00682 628 FunFam Pectinesterase 310 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00682 Vimu-Chr5 8054215 8058885 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00682 98 628 Carbohydrate Esterase AT3G10720 62.500 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00682 K01051 - gmx:100808277 959.518