Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00681 ATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGAACACTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTATGCTCATTCCAACCGCCAATTCTACAGGGAATGCAACATTTACGGCACAGTTGATTTCATTTTCGGTAATTCAGCAGTTGTCCTCCAAAACTGCAACATTTTTCCAAGGGTGCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGACCCCAACATGAACACAGGAATTTCAATTCAAAATTGCACCATTTCACCCTTTGGGGACTTAAGTTCTGTCCAGACATACCTTGGAAGACCCTGGAAGAACTACTCAACCACAGTGTTTATGCAGTCCTCATTGGGGAGTATCATCAACCCAAATGGATGGTTACCATGGGTAGGAAACTCAGCACCAGATACAATATTTTATGCAGAATTTCAGAACGTTGGACCTGGAGCTTCAACTAAAAATAGGGTCAAGTGGAAGGGTTTGAAAACCATTACATCTAAACAAGCTAGCAAGTTTACTGTCAAAACTTTTATTTCAGGGGAGAAATGGATTCCAGCTTCGGGTGCCACCTTTAAATCTTCTCTGTGA 645 0.4341 MGFRNTAGPQKHQAVALMNTADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQNCTISPFGDLSSVQTYLGRPWKNYSTTVFMQSSLGSIINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKTITSKQASKFTVKTFISGEKWIPASGATFKSSL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00681 214 PANTHER PECTINESTERASE 1 204 - -
Vimu5g00681 214 Pfam Pectinesterase 1 199 IPR000070 GO:0030599|GO:0042545
Vimu5g00681 214 SUPERFAMILY Pectin lyase-like 2 210 IPR011050 -
Vimu5g00681 214 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Vimu5g00681 214 Gene3D - 1 214 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00681 Vimu-Chr5 8052907 8053551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00681 1 214 Carbohydrate Esterase AT3G10710 68.224 1.04e-112 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00681 - - gmx:100808802 412.149