Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00680 ATGTCTTCCTTCAAATCTTATGGCAAAGTTGATGAATCAGAGCAAGCCATGCTCGAAGTTCGGCGCAAAACCCGAAAGAGAATAACGATCATAGCCTTGTCCACAGTAGTCCTCATTGGAGTTTTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAACAACTCAAATGATGCTGAAAACAATGCTGCTTCTGTTTCGAACTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGACGCCTGCTACAGCAGTCTTGGTTCTCTTGCACACTCGGGTCAGGTTTCACCTGAGGAGTTGTTCTTGTTGTCTATTAAGGTGGCCTTAGCTGAGGCTTCTAAGGCTGCTCAGTATTTCTCTGAAAAGGGAGGGTTCAGTGGCTTGAATGTTGATGACAAGATCGTGGAAGATTTTAAGAACTGCAAGGATCTTCTGGGTCTTGCAGTTGATCATTTGAATAGCTCTCTGGCTTCTGGGGGGAAGTTTTCCTTGGTTGATATGTTAGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATTGATGGCATTGGAGAGGCAGAAGAAGCATTTAAGAGCAGTGTATTCAATATTCTGAAAAATTCAACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTGACAAGGCCGCAAGCAGTGTGAAACTGAGGCGCTTGTTGAGTACTTTGCCACACAAAGATGAAGAGCCAAAGTGGCTTCATTCTAAAGATCGAAAGATGCTACAAGCTGATGATTTGAAGAAGAAAGCTAATATTGTTGTAGCCAAAGATGACAGCGGAAATTTTAAAACAATCACTTCTGCACTTGAACATGTCACTGACAAAAGTGACAAGAGAACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCTGGAAGCCTTAATTTTATGGATGGCACCCCAACATTTTCATCAGCAACATTTGGTATGTAA 1056 0.4252 MSSFKSYGKVDESEQAMLEVRRKTRKRITIIALSTVVLIGVLCAAVFGTVAHNNNNNSNDAENNAASVSNSVKAVCDVTLYKDACYSSLGSLAHSGQVSPEELFLLSIKVALAEASKAAQYFSEKGGFSGLNVDDKIVEDFKNCKDLLGLAVDHLNSSLASGGKFSLVDMLEDLRTWLSAAGTYQQTCIDGIGEAEEAFKSSVFNILKNSTEFTSNSLAIVTWLDKAASSVKLRRLLSTLPHKDEEPKWLHSKDRKMLQADDLKKKANIVVAKDDSGNFKTITSALEHVTDKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGSLNFMDGTPTFSSATFGM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00680 351 NCBIfam pectinesterase inhibitor domain 58 224 IPR006501 GO:0004857
Vimu5g00680 351 Gene3D - 263 351 IPR012334 -
Vimu5g00680 351 SMART PMEI_2 67 220 IPR006501 GO:0004857
Vimu5g00680 351 Pfam Pectinesterase 268 350 IPR000070 GO:0030599|GO:0042545
Vimu5g00680 351 FunFam Pectinesterase 68 225 - -
Vimu5g00680 351 Pfam Plant invertase/pectin methylesterase inhibitor 71 220 IPR006501 GO:0004857
Vimu5g00680 351 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 224 IPR035513 -
Vimu5g00680 351 CDD PMEI-like_3 74 226 - -
Vimu5g00680 351 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Vimu5g00680 351 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 226 IPR035513 -
Vimu5g00680 351 SUPERFAMILY Pectin lyase-like 266 349 IPR011050 -
Vimu5g00680 351 PANTHER PECTINESTERASE 39 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00680 Vimu-Chr5 8049750 8050914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00680 1 351 Carbohydrate Esterase AT3G10710 50.425 1.02e-111 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00680 - - pvu:PHAVU_011G1890000 575.859