Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00661 ATGGAGCAGGAGATGGAGAACATAGAGTCTCAAACTTCCTACATAACAACATTACAAGGCGAAGCACCTGACATCTCTTGCAAGGGGAATCCCTCCGTAACTCTAAAGTTCCGCGATGTTACTTACAAAATTAAGACCAGAAAGGGGGGGTTTCTGAAGAGCAAAATAGAAGAGAAAGTAGTTCTGAATGGAGTGGCAGGCATGGTTCAACCTGGTGAAATTCTTGCAATGTTAGGTCCCTCTGGGAGTGGCAAAACTACTTTGCTAGCAGCATTGGGAGGCAAGCTTGGTGGGAAACTCTATGGAAGCATAACATATAATGGCAAAGCCTTCTCAAATGCAATGAAGAGGAAAACAGGTTTTGTGCCACAAGATGATGTTCTCTATCCCCACTTGACTGTGACTGAAACTCTAGTGTTCACAGCCTTTCTCAGATTGCCAAGCAGTTTATCCAAAAAGGAGAAAATTCAGCATGCAAAAGCTGTGATGGCTCAACTTGGTTTAACCAAGTGCAAGGACAGCATCATTGGAAGCCCAGTTCTTAGAGGTGTTTCTGGTGGGGAGAAAAAAAGGGTCAGTATTGGACAAGAAATGCTCATAAACCCAAGCTTGCTATTTCTGGATGAGCCAACTTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCTATTTTGTGGGAATTAGCAAATGGAGGGAGAACCATTTTGATGACCATACATCAACCTTCAAGTAGGATTTACTGCATGTTTCATAGGGTGTTACTGCTTTCAGAAGGAAACCTACTATATTATGGAAATGGATCTGAAGCTATGGAATATTTTACTAATATTGGATTTGCCCCAACCATGCCATTGAACCCCTCAGATTTCCTTTTGGATCTTGCAAATGGTGTCTACACTGGTCAATCGAATGAGGACAATGCCTTAAATAAGAACAAATTGATTTCTGCATATAGGAACTACTTTGATGTCAAATTTAAGCCAGTGATACAAGAAATTCCAGACTACGATAAAACTCAGGGTAGATTTGAAAGCAATAAATTTGGGGAATGGCCTACCAGTTGGTCAAATCAGTTTCTTGTACTGCTAAAAAGAGATGTCAAAGAGAGAAAATATGCATCATTTTCTTGCCTGAAGATTGGAATTCTATTCTTCCTTACTAGCTTTTGGGGTAGCATGCCTCTTTATCAAGCAATATTCACTTTCCCCCAAGAGCTAATGATTCTTGAGAAGGAACGATCCTCTGGAATGTACAAGCTCTCATCATACTTCATTTCAAGGATGGTTGCTGACCTTCCAATGGAGCTCGTGCTTCCTTCCATATTCATCACCATAATCTATTGGCTGGTGGGATTGAAAAACAATGTGGTAAGTTTCTTATGCACACTTGTCACTATTGTACTCGATGTGTTGGTTTCACAAGGACTAGGCCTTGCCATTGGTGCTATTGTAATGGACCAGAAATCCGCAACCACACTGGCCTCAGTGATTATGCTAACTTCTATTTTGGTTAGTGGATACTATATTCAACGTGTGCCAAAATTTGTATCATGGCTCAAGTACTTCTCCATTAACTACTACACATACCATCTCCTGATGGGGTCTCAATATGGCTTAAGTGACACATACCCATGTTCTCATGGAAAGTGTTTGGTTGCAGAATATCCTTTGATAGAACAAAAGGGGTTACATTTTCAAGGGAAAGTCATGGCTGTATCGGCTCTATTCATAATGCTTATAGGATACAGATTAGTGGCTTATTTGGCTCTGATGAAAATTGGGATGACAAAGAAAATGCGATAG 1806 0.4064 MEQEMENIESQTSYITTLQGEAPDISCKGNPSVTLKFRDVTYKIKTRKGGFLKSKIEEKVVLNGVAGMVQPGEILAMLGPSGSGKTTLLAALGGKLGGKLYGSITYNGKAFSNAMKRKTGFVPQDDVLYPHLTVTETLVFTAFLRLPSSLSKKEKIQHAKAVMAQLGLTKCKDSIIGSPVLRGVSGGEKKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSILWELANGGRTILMTIHQPSSRIYCMFHRVLLLSEGNLLYYGNGSEAMEYFTNIGFAPTMPLNPSDFLLDLANGVYTGQSNEDNALNKNKLISAYRNYFDVKFKPVIQEIPDYDKTQGRFESNKFGEWPTSWSNQFLVLLKRDVKERKYASFSCLKIGILFFLTSFWGSMPLYQAIFTFPQELMILEKERSSGMYKLSSYFISRMVADLPMELVLPSIFITIIYWLVGLKNNVVSFLCTLVTIVLDVLVSQGLGLAIGAIVMDQKSATTLASVIMLTSILVSGYYIQRVPKFVSWLKYFSINYYTYHLLMGSQYGLSDTYPCSHGKCLVAEYPLIEQKGLHFQGKVMAVSALFIMLIGYRLVAYLALMKIGMTKKMR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00661 601 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Vimu5g00661 601 Gene3D - 34 278 IPR027417 -
Vimu5g00661 601 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 284 IPR003439 GO:0005524
Vimu5g00661 601 Pfam ABC-2 type transporter 373 538 IPR013525 GO:0016020|GO:0140359
Vimu5g00661 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 277 IPR027417 -
Vimu5g00661 601 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Vimu5g00661 601 FunFam ABC transporter G family member 22 51 278 - -
Vimu5g00661 601 SMART AAA_5 71 261 IPR003593 GO:0016887
Vimu5g00661 601 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 19 588 - -
Vimu5g00661 601 Pfam ABC-2 type transporter 241 312 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00661 Vimu-Chr5 7754641 7758295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00661 69 273 Calmodulin-binding Proteins AT2G36910 25.118 4.36e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00661 K05681 - gmx:100812397 899.042