Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00660 ATGGGAGTTCAAGAGAGAGATCCTCTGGCACAGTTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGAAAAGTTGCTGGGCACCATTTTTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTATTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGTTCACGGCCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCAACGGGAACTGATAAGGTTATCACAACCGAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCGCGCAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGACCAACCTTTGGGGCAAAGAATGCAGCAATGGGTCGTCACCTTCTTCATCTTCCCACGTGGAAGACATGGTCGAATCGTTTCTCGAGATCGATGATAAGTGCTTCAATTTTCCGGGTGTGAACTCGCTCAAAACAATGCAACAACAGGACGAGAAATACGGGTTTCAAAACATGAGATCCGGATTTTTTTCTGATTGGGTCACCCCACCGGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCGGAACCCAAGGGATGGTGAATTATGAGTTCAATGACTTATTTGTCCCTTCTGTGCCGCCATTTGGTCACGTGGAGTTCATGTCAGGGGCACCCATGGAGGAGGAAGTTCAAAGCTGTGTGAGAACCCAACGGGCTGACGGAGCGGGATATTTTCAACAGAACCCGAATGCCCGTAATTTGTCCGGCTCCAACGAAACGTTTGGGTTGGGGTTCACGGATCAGCAAATCAGGTTCGGGTTACGGAACTAG 1011 0.4649 MGVQERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVETNLWGKECSNGSSPSSSSHVEDMVESFLEIDDKCFNFPGVNSLKTMQQQDEKYGFQNMRSGFFSDWVTPPDLDSISEFGSGCGTQGMVNYEFNDLFVPSVPPFGHVEFMSGAPMEEEVQSCVRTQRADGAGYFQQNPNARNLSGSNETFGLGFTDQQIRFGLRN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00660 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vimu5g00660 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vimu5g00660 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 203 - -
Vimu5g00660 336 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vimu5g00660 336 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Vimu5g00660 336 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00660 Vimu-Chr5 7727068 7728368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00660 1 251 NAC Transcription Factor Family AT3G15500 64.751 5.91e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g00660 NAM 3.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00660 - - gmx:100811301 577.015