Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00643 ATGGCTGACATAGCGGGTCTGGTTGAGGCTGCAGGGGCAAGATTTGGCTCATTGGAGCTTATTGGGCAAGGGTCATTCGGCGACGTGTATAAAGGGTTTGACAAGGAGCTAAACAAGGAAGTTGCTATCAAAATGATTGATTTGGAAGAATCAGAGGATGAAATAGAAGACATTCAGAAGGAAATTTCTGTTCTGTCCCAATGTCGATCTGCGTACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTAGTAGGTTACTTCTGGAGACATGCTTCTAATAGAACATCCCTTACATGTTTTTGCTTGTTTTTGAATATTTTCATGTGTTGCATTCCTAAGCACTATTGCTGA 405 0.4025 MADIAGLVEAAGARFGSLELIGQGSFGDVYKGFDKELNKEVAIKMIDLEESEDEIEDIQKEISVLSQCRSAYITEYYGSFLNQTKLWIIMEYMAGGSVADLVGYFWRHASNRTSLTCFCLFLNIFMCCIPKHYC 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00643 134 ProSiteProfiles Protein kinase domain profile. 15 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00643 134 Coils Coil 41 68 - -
Vimu5g00643 134 SUPERFAMILY Protein kinase-like (PK-like) 14 104 IPR011009 -
Vimu5g00643 134 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vimu5g00643 134 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 102 - -
Vimu5g00643 134 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vimu5g00643 134 Pfam Protein kinase domain 18 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00643 134 SMART serkin_6 15 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00643 Vimu-Chr5 7577876 7583964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00643 1 117 MAP Kinase Kinase Kinase Kinase AT3G15220 76.923 1.37e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vimu5g00643 Pkinase 3.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00643 K08838 - gmx:100786501 184.496