Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00630 ATGGATAGTGGCTACTACAATCAGCAACACCTCCCTCACCTCGACAACACTAATGAACCACATTTACCTCCTGGCTTCAGGTTCCATCCGACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGTTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAACCATGGGAGCTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTTTATAGCCTCCGTGACCGGAAGTACCCAACTGGTTTACGCACCAACAGGGCCACGGAGGCTGGTTATTGGAAAGCCACCGGAAAAGACAGAGAGATCTATAGCTCCAAAACCTGTTCCCTCGTTGGAATGAAGAAAACCCTGGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCCAGAAGCTCAAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTATCAGCCGCCGCAGCCACCGGCAGTTCGAAGAAAACAAGAATGAGCACATCGAACACAAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTGTTCCATTTACCTCCCACCGCTTCTAGAATCTTCCCCTTACGCCACCAGCGGCAGCGCCGCCGCAACGTTCAACGACCGCGAAAGCTACTCCTTCGAAAGTGCCGCCGCCACCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGACGCTGCCGCCTTCAACCACCTCGCTCCGCCGCCGGAACCGCCACTCGATCCTTTCTCCCGCTTTCACAGGAACAACATTGGAGTATCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCACGGCGGTTCTGACGTAGCAAATTTTACCGGCATAGCAAACTTGCCGGCTCCGGAGGAGCCAAGGGTGGCTGACGGCAGTTCTGGCATGCCGATTGTACCGTCCGAATTGGACTGCATGTGGGGCTATTGA 1092 0.5366 MDSGYYNQQHLPHLDNTNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAAATGSSKKTRMSTSNTSSNMSLCPEPGSPCSIYLPPLLESSPYATSGSAAATFNDRESYSFESAAATANQREHVSCFSTMSTDAAAFNHLAPPPEPPLDPFSRFHRNNIGVSAFPCLRSLHDNLNLPFFFPPVVHGGSDVANFTGIANLPAPEEPRVADGSSGMPIVPSELDCMWGY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00630 363 FunFam NAC domain-containing protein 100-like 31 178 - -
Vimu5g00630 363 MobiDBLite consensus disorder prediction 182 208 - -
Vimu5g00630 363 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Vimu5g00630 363 SUPERFAMILY NAC domain 17 174 IPR036093 GO:0003677|GO:0006355
Vimu5g00630 363 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
Vimu5g00630 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 241 - -
Vimu5g00630 363 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00630 Vimu-Chr5 7346698 7349115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00630 1 363 NAC Transcription Factor Family AT5G53950 50.758 8.00e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g00630 NAM 3.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00630 - - gmx:100788671 590.882