Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00620 ATGGATAGTTTAGAAAGCAATGAAGACGTTCATATTATAGATGATACTTTACCTGAATTGGTTCCTACTTTGAACATGTGTTTTGACACTATGGAACAAGCAAAGAAATGTTATTCTGACTATGGAAAAAGATGTGGTTTTGGTGTTCGAACAAGAACTTCAAAAAAGGACAAGAATAATGATGTCTACTACTTGAGATTGGTATGTTCAAGGGAAGGTAAATATGTGTCTAACGTTAGGCCTGAAGTCAAGACTTTGCCTAGTCAGACTAATGAATGCCCTGCTGGAATAAAAATTGCTCGAAAAGATGACAAATGGGTGGTGAGGACTATTGTTGTTGAACACAGTCATGAGCTTTGTCCACAAAACTCGAATCTAATCTGTTCCAATAGAAAGTTGAACATGCATGTGAAACACACATTGGAAATAAACGATGATGTCGGTGTACGTATTAACAAGAGTTTTCTAAGCATGGTTGGTGAAGCGGGTGGTTATGAAAATATGCAATTTATGGAGAGAGATGCTAGGAACTTCATCGGTCAACATAGAAGGTCAGTTTGTAAGGAGGGGGATGGTCAAACACTGCTACGACACTTTTCCAAAATGAGAGACCTCAACAATGATTTCTTCTATGATCTTGAAATGGATGAAGGAAATAGAATTACAAGTGTTTTTTGGGCGGACGCCAAAAGTCGAGCTGCTTGTGAGGAATTCGGTGATGTCGTGTCTTTTGATACAACTTACTTAACAAACAAATATGACATGCCTTTAGCACCGTTTGTGGGAGTAAACCATCATGGCCAATCCATCCTACTTGGGTGTGGATTACTCTCATCGGAGGATACTAGGTCATTTGTGTGGTTATTCGAAACTTGGTTAAGATGTATGGGCAACAAGGCACCAGACAGTATTGTAACAGACCAATGTAGGGCCATGACTAATGCAATTGATCAAGTCTTCCCATCAACAAAACATAGGTGGTGTTTGTGGCACATAATGAAAAAGATACCTGAAAAATTACAAGGGTATAAGAATTATCTTAGTATGAAGACTGATCTTAAAGTGCTTGTATATGACTGTTGTTCTACATTAGAGTTTGAAATTGAAAATAAAGAATGGTTAGCCAATTTGTACCATGATAGACACATGTGGGTGTCTTGCAACTTGAAGAATCATTTTTGGGCAGGTATGTCCACAACGCAAAGAAGTGAGGGAATGAATGCATTCTTTGATGGATTTATCAATTCCAGCACTACACTTCAACAATTTGTGGTTCAGTACGATAATGCTCTTAAATTCAAAGCCCAAAAAGAAATAGAAGCCGACTTCGCTTCCATCAATACAACAATTGCATGTGGTTCTCAATCACCTATTGAAAGACAATTTCAACTGGAGTACACACATGCCAAATTTGAGGAAGTACAGAATGAGTTTCGGTCTAGGATGAATTGTTTCATCAAAGACACGGTGAAGGACTGTATTTCTAACAAGTACACTGTCAAAGAAGAGTGCATGTGGGATGGGAAATTAGGTATTATATGTCGGCATTGCCTATTGGTTCTTGGTCAAGAAGATGTACAAAATGTCCCCGCCAAATATGTTCTCCGCCGTTGGAGCAAAAATATCAGAAGAAAACACACATTGATTAGAGCAGCTTATAGTTCTTTGCATCAAGAACCGAAGATGCAAAGATACCAATTGTTGTGTAAGAGGTTCTATGACATAGCTGAGGCCGCATGTGAATCTGAATCGACATCTCATGACTTGGAGAAAGATTTGAATTGTCTTGCTAAAAAGTTTGGAGTCTCTTCGTCATTAAGAAATAACATTATAAGTGATGGAGGACAACTCAGGTATGACATTCCAGTTTCCGATACTCCATCGTACACTGCATGTGGAAGTAGTGATGTACTTGTTCGAAGTCCCGTTGCGGTGAAACGTAAAGGCCGACCAAGAACTAACTGA 1965 0.3873 MDSLESNEDVHIIDDTLPELVPTLNMCFDTMEQAKKCYSDYGKRCGFGVRTRTSKKDKNNDVYYLRLVCSREGKYVSNVRPEVKTLPSQTNECPAGIKIARKDDKWVVRTIVVEHSHELCPQNSNLICSNRKLNMHVKHTLEINDDVGVRINKSFLSMVGEAGGYENMQFMERDARNFIGQHRRSVCKEGDGQTLLRHFSKMRDLNNDFFYDLEMDEGNRITSVFWADAKSRAACEEFGDVVSFDTTYLTNKYDMPLAPFVGVNHHGQSILLGCGLLSSEDTRSFVWLFETWLRCMGNKAPDSIVTDQCRAMTNAIDQVFPSTKHRWCLWHIMKKIPEKLQGYKNYLSMKTDLKVLVYDCCSTLEFEIENKEWLANLYHDRHMWVSCNLKNHFWAGMSTTQRSEGMNAFFDGFINSSTTLQQFVVQYDNALKFKAQKEIEADFASINTTIACGSQSPIERQFQLEYTHAKFEEVQNEFRSRMNCFIKDTVKDCISNKYTVKEECMWDGKLGIICRHCLLVLGQEDVQNVPAKYVLRRWSKNIRRKHTLIRAAYSSLHQEPKMQRYQLLCKRFYDIAEAACESESTSHDLEKDLNCLAKKFGVSSSLRNNIISDGGQLRYDIPVSDTPSYTACGSSDVLVRSPVAVKRKGRPRTN 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00620 654 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 599 IPR031052 GO:0006355
Vimu5g00620 654 Pfam FAR1 DNA-binding domain 38 120 IPR004330 -
Vimu5g00620 654 Pfam MULE transposase domain 241 335 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00620 Vimu-Chr5 7027805 7029881 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g00620 MULE 1.3e-35 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00620 - - var:108341250 1070.84