Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00616 ATGGAATGTTATTTTACTTGGTTACGCAAAGAAGCAAGCCAGATTTCAAGAGGATTCTCAATCATCTCTGTCACTTTTGCAGCACTAGGTTTGATTAATTGGAGCAGGAGGGTTACTCTGATGACTTGTTTCTTTAACCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACTCGATTGACCGGAGTTGATTTAGGTGATACTGTTACAGATGGCATGCTTATATACCGGAAGCATGAGCCCTATTTTCTTTACAATATATATGCTGCAACAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAGGTTTTAGTCCTTCAAACAAGATAGGACAGGGAGGTTTTGGAGAAGTCTATAAGGTGATTGCATTGCAGCAGTATGCTGAATCAAAACAAGGGGTTCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGTTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGTCTAGCACAAACACTTATTGGTCCTGTCATATTTTTGGTTCCTATGGTTTCTTATGGTAGAATTAGAATCTTGTCTTGTTCATCATCGTTAAGTGGATGGAAACTCAAAAGTCAATGTGTTTTACAGGCTTGGGATTTGTATGAGGCTGGAGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAATCAGATTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGACCCTCTATGTCCATTGTGGTTGAAATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACTAAACCAGGCATGATATTTGAATTTGTGGAAGCAAAAAGTGCATGGAAACAAAAGGGCAAGTCTGAAGAGAATGGTAAACTTATGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCCGAAACCATGACCTCTTTTGCTACCATGACCTTCACAGCAATATGTGATCGAAGTAATTAA 1062 0.3983 MECYFTWLRKEASQISRGFSIISVTFAALGLINWSRRVTLMTCFFNLFRKKGSSSGTRLTGVDLGDTVTDGMLIYRKHEPYFLYNIYAATDVSEIQNVNIYTYRELRSATEGFSPSNKIGQGGFGEVYKVIALQQYAESKQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGPVIFLVPMVSYGRIRILSCSSSLSGWKLKSQCVLQAWDLYEAGETEKLVDAFLDGDFNVEEAIRFCKIALLCTQDSPQLRPSMSIVVEMLLGEKDVNEENVTKPGMIFEFVEAKSAWKQKGKSEENGKLMLAEGKQDESSSSETMTSFATMTFTAICDRSN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00616 353 Gene3D Transferase(Phosphotransferase) domain 1 208 303 - -
Vimu5g00616 353 Gene3D Phosphorylase Kinase; domain 1 84 180 - -
Vimu5g00616 353 SMART tyrkin_6 113 282 IPR020635 GO:0004713|GO:0006468
Vimu5g00616 353 SUPERFAMILY Protein kinase-like (PK-like) 83 282 IPR011009 -
Vimu5g00616 353 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 221 329 - -
Vimu5g00616 353 Pfam Protein kinase domain 116 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00616 Vimu-Chr5 6948762 6953149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00616 228 295 Receptor kinase-like Gene Family AT1G53430 47.059 3.71e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00616 Pkinase 2.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00616 - - gmx:100797257 203.756