Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00613 ATGTGTTGCAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATAGACCCCAGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGAGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCCGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATCGAGGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAGTGAAGGATTATGAACTTTTGCGGAGAGAATTGCCAGATGACAATGATGTTGCCGAAAATCTGTTTCATGCACAAGTAGCACTAAAGAAATCTCGTGGGGAAGAAGTACGTAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCGGGTGTTTCTGTGGATATTCAAGCAAGCCCTGCAGTTGCCTCTGCTGAGAATGTTAGAGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCTATTAGGCCTTACAGCTTGTAG 711 0.4276 MCCRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVRNLKFGGEVEDISGLEQFRAAISLPGVSVDIQASPAVASAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRPYSL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00613 236 Coils Coil 109 129 - -
Vimu5g00613 236 SMART tpr_5 69 102 IPR019734 GO:0005515
Vimu5g00613 236 SMART tpr_5 103 136 IPR019734 GO:0005515
Vimu5g00613 236 SMART tpr_5 35 68 IPR019734 GO:0005515
Vimu5g00613 236 Pfam Tetratricopeptide repeat 71 102 IPR001440 GO:0005515
Vimu5g00613 236 CDD TRX_family 185 222 - -
Vimu5g00613 236 Gene3D Glutaredoxin 163 235 - -
Vimu5g00613 236 SUPERFAMILY Thioredoxin-like 184 221 IPR036249 -
Vimu5g00613 236 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Vimu5g00613 236 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 3 232 IPR044534 -
Vimu5g00613 236 Gene3D Tetratricopeptide repeat domain 3 155 IPR011990 GO:0005515
Vimu5g00613 236 SUPERFAMILY TPR-like 39 152 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00613 Vimu-Chr5 6856673 6860075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00613 34 179 U-box Gene Family AT3G07370 28.415 2.18e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00613 - - gmx:100805790 426.787